Instead of flashcards, we Rube Goldberg’d this with Bioconductor! Analyzed 3,280 E. coli genomes from NCBI, detecting ESBL genes in 84.4% of samples. CTX-M-15 was most common. Helped us understand gene nomenclature and sequence analysis! 📊🔬 Motivation I’ve always had a hard time learning and remembering all these genes for antimicrobial ...

Below are the slides for my Futureverse P2P: Peer-to-Peer Parallelization in R talk that I presented at the useR! 2025 conference at Duke University, Durham, North Carolina, United States. Title: Futureverse P2P: Peer-to-Peer Parallelization i...

Introduction When teaching, for my practicals/tutorials and for about half of my lectures I find myself preparing them using R Markdown and laterly Quarto. I enjoy preparing the material in R Markdown and Quarto because it gives me a reproducible way o...

Author’s introduction This post grew out of a rambling, sporadically multi-month play with a bunch of data that became far too big for a single post for any plausible audience. So I have broken that work into three artefacts that might be of interest ...

We just arrived in Kyoto (京都), Japan, from Montréal, Canada. Everything seems very different. I still have in mind the time I spent in Hong Kong (more than a year), but that was 25 years ago… Just to compare, I used wikipedia’s page of Kyoto vs. Montréal. Quite naturaly, ...

We are thrilled to announce the release of {rtflite} 1.0.0, marking a significant milestone in bringing production-ready TLF generation capabilities in RTF format to Python for clinical trial reporting. This major release represents our commit...

We are thrilled to announce the release of {rtflite} 1.0.0, marking a significant milestone in bringing production-ready TLF generation capabilities in RTF format to Python for clinical trial reporting. This major release represents our commit...

When it comes to data science training, one size doesn’t fit all. At Jumping Rivers, we’ve built our reputation around delivering customised, expert-led training that actually fits your team’s goals, tools, and workflows - whether you’re in...