ggplot2

Further Adventures in Visualisation with ggplot2

April 25, 2011 | hayward

So I previously took a look at some data of player performance from a computer game. In this post, I’m going to do some further visualisations using ggplot2. The data consists of different types of player character, different roles for those characters, and their overall damage output (the unit ... [Read more...]

Transaction cost analysis and pre-trade analysis

April 20, 2011 | Dzidorius Martinaitis

Transaction cost analysis (TCA) is the framework to achieve best execution in trading context. TCA can be split into three groups: pre-trade analysis, intraday analysis, and post-trade measurement. Pre-trade analysis allows us to get insight about the future volatility of the price, forecast intra-day and daily volumes, market impact. It ... [Read more...]

Measuring Price Dispersion of Marijuana

April 12, 2011 | Adam.Hyland

The intersection of mapping APIs, fast database operations and user engagement offers a lot of very cool crowdsourcing applications ranging from the benign and powerful (Google’s Person Finder) to the minor and questionable (A DUI checkpoints app). Most intriguing in … Continue reading → [Read more...]

Book: ggplot2 by Hadley Wickham

April 4, 2011 | Dzidorius Martinaitis

All my recent plots are built using ggplot2 package. I don’t know if my dear readers have noticed the difference, but from my point of view, ggplot2 allows to create nice looking and aesthetics plots. I was using this package before, but the real boost came after reading this ... [Read more...]

Phylometa from R – UDPATE

April 1, 2011 | Scott Chamberlain

A while back I posted some messy code to run Phylometa from R, especially useful for processing the output data from Phylometa which is not easily done. The code is still quite messy, but it should work now. I have run the code with tens of different d...
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clusterProfiler in Bioconductor 2.8

March 26, 2011 | R on Guangchuang Yu

In recently years, high-throughput experimental techniques such as microarray and mass spectrometry can identify many lists of genes and gene products. The most widely used strategy for high-throughput data analysis is to identify different gene clusters based on their expression profiles. Another commonly used approach is to annotate these genes ... [Read more...]

Radiation levels at Fukushima

March 24, 2011 | Adam.Hyland

From BWR The above graph is derived from data scraped from TEPCO press releases. Every hour or so for the first few days of the crisis, a TEPCO van would record radiation (probably Beta/Gamma, but the translation is unclear) at … Continue reading →
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basic ggplot2 network graphs – ver2

March 23, 2011 | Scott Chamberlain

I posted last week a simple function to plot networks using ggplot2 package. Here is version 2. I still need to work on figuring out efficient vertex placement.Changes in version 2:-You have one of three options: use an igraph object, a matrix, or a da...
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The housing bubble by city

March 17, 2011 | dan

The housing bubble by city. Miami sailed high and fell far. Detroit rose modestly and but dropped more than it went up. Dallas held steady. DC is enjoying a bit of renewed growth, but are in and New York yet to fall? [Read more...]

basic ggplot2 network graphs

March 17, 2011 | Scott Chamberlain

I have been looking around on the web and have not found anything yet related to using ggplot2 for making graphs/networks. I put together a few functions to make very simple graphs. The bipartite function especially is not ideal, as of course we only w...
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More pi plus 1 (or plus 0.01) day fun

March 15, 2011 | Adam.Hyland

Since I just didn’t get enough this morning, I spent some more time fooling around with estimating pi. Since I was basically counting the number of random x,y pairs inside a quarter circle and computing a sample average for more … Continue reading → [Read more...]

Parallel computation [revised]

March 14, 2011 | xi'an

We have now completed our revision of the parallel computation paper and hope to send it to JCGS within a few days. As seen on the arXiv version, and given the very positive reviews we received, the changes are minor, mostly focusing on the explanation of the principle and on ...
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Legendary Plots

March 12, 2011 | richierocks

I was recently pointed in the direction of a thermal comfort model by the engineering company Arup (p27–28 of this pdf). Figure 3 at the top of p28 caught my attention. It’s mostly a nice graph; there’s not too much junk in it. One thing that struck me was ... [Read more...]

Forest plots using R and ggplot2

March 9, 2011 | Stephen Turner

Abhijit over at Stat Bandit posted some nice code for making forest plots using ggplot2 in R. You see these lots of times in meta-analyses, or as seen in the BioVU demonstration paper. The idea is simple - on the x-axis you have the odds ratio (or what... [Read more...]

A Short Return to the Age-Earnings Profile

March 8, 2011 | Adam.Hyland

Two posts ago I mentioned the age-earnings profile but did not provide a regression of log earnings on wage. I also offered, without evidence, that fitting a simple linear regression would be inappropriate. How do I know that? How could … Continue reading → [Read more...]

The cranky guide to trying R packages

February 13, 2011 | John Mount

This is a tutorial on how to try out a new package in R. The summary is: expect errors, search out errors and don’t start with the built in examples or real data. Suppose you want to try out a novel statistical technique? A good fraction of the time ... [Read more...]

CPU and GPU trends over time

January 25, 2011 | csgillespie

GPUs seem to be all the rage these days. At the last Bayesian Valencia meeting, Chris Holmes gave a nice talk on how GPUs could be leveraged for statistical computing. Recently Christian Robert arXived a paper with parallel computing firmly in mind. In two weeks time I’m giving an ...
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