Articles by biochemistries

ropensci/wishlist: A Google Docs-Rmarkdown GUI

March 10, 2015 | biochemistries

ropensci/wishlist: A Google Docs-Rmarkdown GUI: Wishlist for rOpenSci tools I’ve just added A Google Docs-Rmarkdown GUI to the rOpenSci ‘wishlist’. (GUI = graphical user interface). Thought I may as well reproduce it below: Summary: Use Google Docs for ease of drafting, aiming to output Rmarkdown to increase the use ...
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Ants, snakes, and the hydrophobic-polar model

December 1, 2014 | biochemistries

The other night I was reading Lesk’s Introduction to Protein Science, when I came across this diagram: A lattice model represents the structure of a protein as a connected set of points distributed at discrete and regular positions in space, with simplified interaction rules for calculating the energies of ...
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A bioinformatics walk-through: Accessing protein-protein interaction interfaces for all known protein structures with PDBe PISA

September 28, 2014 | biochemistries

If this summer’s posting became a little infrequent, part of the blame lies with computational research I’ve been working on, regarding the systems biology of chromosomal translocations and the ensuing chimeric proteins at the Medical Research Council Laboratory of Molecular Biology in Cambridge. A sizeable part of bioinformatics ‘...
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