January 2023

Tips for organising your R code

January 30, 2023 | tomaztsql

Keeping your R code organised is not as straightforward as one might think. Just think about the libraries, variables, functions, and many more. All these objects can be defined and later rewritten, some might get obsolete during the process. This…Read more ›
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Default Hyperparameter Configuration

January 30, 2023 | Marc Becker

Scope The predictive performance of modern machine learning algorithms is highly dependent on the choice of their hyperparameter configuration. Options for setting hyperparameters are tuning, manual selection by the user, and using the default ...
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Default Hyperparameter Configuration

January 30, 2023 | Marc Becker

Scope The predictive performance of modern machine learning algorithms is highly dependent on the choice of their hyperparameter configuration. Options for setting hyperparameters are tuning, manual selection by the user, and using the default c...
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smooth v3.2.0: what’s new?

January 30, 2023 | Ivan Svetunkov

smooth package has reached version 3.2.0 and is now on CRAN. While the version change from 3.1.7 to 3.2.0 looks small, this has introduced several substantial changes and represents a first step in moving to the new C++ code in the core of the functions. In this short post, I will outline the ...
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December 2022: “Top 40” New CRAN Packages

January 29, 2023 | R Views

One hundred sixteen new packages stuck to CRAN in December 2022. Here are my “Top 40” selections in thirteen categories: Computational Methods, Data, Ecology, Epidemiology, Genomics, Machine Learning, Mathematics, Medicine, Networks, Signal Processing, Statistics, Utilities, and Visualization. Computational Methods bgw v0.1.0: Implements the BGW algorithm described by Bunch, Gay and Welsch (1993) which ...
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Snow in Montréal (Canada)

January 29, 2023 | arthur charpentier

Winter started a bit more than one month ago… but we have already experienced many snow storms… there is still a lot snow in gardens and in the streets, I was wondering if it was that unusual, but apparently not. Compared with last year, it is (for the first months ...
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An R function to compute Tumor Mutational Burden (TMB)

January 28, 2023 | fabiomarroni

Tumor mutational (or mutation) burden, TMB, is considered a useful estimation of tumor neoantigenic load (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6336005/) and a biomarker of sensitivity to immune checkpoint inhibitors (https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-017-0424-2). Computing TMB is relatively easy. Together with a ... [Read more...]

Spaghetti Code Dieting Tips

January 28, 2023 | giles.dickenson.jones

As an independent consultant the majority of my work is about solving novel problems faced by my clients. At a basic level, a client has a question they need answered or a problem they’d like solved and my job is to develop something that meets their needs (given the ...
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