Monthly Archives: November 2011

Count different positions between two strings of equal length

November 26, 2011
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Count different positions between two strings of equal length

This is another pretty simple function, written to help me solve the simplest representation of a trivial but tedious task. Most biologist are probably familiar with this task. How many nucleotide differences exist between two given sequences? I only faced the easiest part of the problem, i.e. I do not perform alignment, I just assume that

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Deductive imputation with the deducorrect package

November 26, 2011
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Deductive imputation with the deducorrect package

Missing data hinders statistical analyses. Estimating missing values (imputation) prior to analysis is one way to deal with that. In some cases however, the missings need not be estimated at all, since they can be derived with certainty from other … Continue reading →

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int64: 64 bit integer vectors for R

November 26, 2011
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int64: 64 bit integer vectors for R

The Google Open Source Programs Office sponsored me to create the new int64 package that has been released to CRAN a few days ago. The package has been mentionned in an article in the open source blog from Google. The package defines classes i...

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The Global Earthquake Desktop

November 25, 2011
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The Global Earthquake Desktop

One of the first things I do over coffee each morning is scroll through the USGS earthquake RSS feeds.  In the era of free data and open source computing I asked myself, "Wouldn't it be better to visualize all of the earthquakes around the world r...

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..Some More Regex Examples Added to Collection

November 25, 2011
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..Some More Regex Examples Added to Collection

Find the below examples added to my list of regex-examples HERE. Read more »

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Working with isTRUE

November 25, 2011
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Working with isTRUE

This week I was running computations transforming some input files into output files. The problem was that it was a repeated process. If new input files were generated or old ones were updated I needed to calculate new output files. The transformation ...

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ConPA uses cloudnumbers.com as calculation backend

November 25, 2011
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ConPA uses cloudnumbers.com as calculation backend

ConPA is an asset allocation application using the classic Markowitz approach. For the calculations the open-source statistical programming language R is used. R scripts are executed on cloudnumbers.com’s computer clusters in the Cloud and the results are displayed by ConPA frontend. ConPA allows to set the investment date of the portfolio, the target return and

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Sending Email from R (using sendEmail)

November 25, 2011
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Sending Email from R (using sendEmail)

Like a lot of other R users I’ve felt the need for sending email from R. I haven’t surveyed CRAN for such a package but looked for the possibility of sending command line email in Windows. Found a nice application called sendEmail that can be found here Below are code snippets in R that will

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Pseudo-Random vs. Random Numbers in R

November 25, 2011
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Pseudo-Random vs. Random Numbers in R

Earlier, I found an interesting post from Bo Allen on pseudo-random vs random numbers, where the author uses a simple bitmap (heat map) to show that the rand function in PHP has a systematic pattern and compares these to truly random numbers obtained from random.org. The post’s results suggest that pseudo-randomness in

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Pseudo-Random vs. Random Numbers in R

November 25, 2011
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Pseudo-Random vs. Random Numbers in R

Happy Thanksgiving, everyone. Earlier today, I found an interesting post from Bo Allen on pseudo-random vs random numbers, where the author uses a simple bitmap (heat map) to show that the rand function in PHP has a systematic pattern and compares these to truly random numbers obtained from random.org. The post’s results suggest that pseudo-randomness in PHP is

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