Blog Archives

Function for phylogeny resolution

January 13, 2012
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Function for phylogeny resolution

I couldn't find any functions to calculate number of polytomies, and related metrics. Here's a simple function that gives four metrics on a phylo tree object: Here's output from the gist above: ` dat $trsize 15 $numpolys 1 $numpolysbyt...

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Moving from blogger and wordpress to jekyll

January 11, 2012
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Moving from blogger and wordpress to jekyll

Recology used to be hosted on Blogger, and my personal website was hosted on Wordpress. Neither platform was very satisfying. Blogger is very limited in their layouts, unless you use dynamic views, which suck because they don't allow javascript snipp...

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Presenting results of logistic regression

January 10, 2012
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Presenting results of logistic regression

So my advisor pointed out this 'new' (well, 2004), way of plotting results of logistic regression results. The idea was presented in a 2004 Bulletin of the Ecological Society of America issue (here). I tried to come up with a solution using, what el...

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Testing twitterfeed

January 8, 2012
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Testing twitterfeed

Does this work on twitterfeed?

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Testing new website

January 6, 2012
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Testing new website

Test post on new Jekyll hosted website...

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Recology is 1 yr old

December 23, 2011
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Recology is 1 yr old

This blog has lasted a whole year already.  Thanks for reading and commenting. There are a couple of announcements: Less blogging: I hope to put in many more years blogging here, but in full disclosure I am blogging for Journal of Ecology now, ...

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Dynamic views don’t support javascript-so reverting back to simple views

December 22, 2011
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Dynamic views don’t support javascript-so reverting back to simple views

Sorry for the temporary loss of GitHub gists...Hopefully dynamic views will support javascript soon!!

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Public vote open for Mendely-PLoS Binary Battle: vote rOpenSci!

November 19, 2011
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Public vote open for Mendely-PLoS Binary Battle: vote rOpenSci!

http://www.surveygizmo.com/s3/722753/Mendeley-PLoS-Binary-Battle-Public-Vote

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