CPU and GPU trends over time

January 25, 2011 | csgillespie

GPUs seem to be all the rage these days. At the last Bayesian Valencia meeting, Chris Holmes gave a nice talk on how GPUs could be leveraged for statistical computing. Recently Christian Robert arXived a paper with parallel computing firmly in mind. In two weeks time I’m giving an ...
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Random variable generation (Pt 3 of 3)

January 12, 2011 | csgillespie

Ratio-of-uniforms This post is based on chapter 1.4.3 of Advanced Markov Chain Monte Carlo.  Previous posts on this book can be found via the  AMCMC tag. The ratio-of-uniforms was initially developed by Kinderman and Monahan (1977) and can be used for generating random numbers from many standard distributions. Essentially we transform the ... [Read more...]

Transitions and transversions in R

January 5, 2010 | Samuel Brown

A couple of months ago I wrote the following R function to calculate the number of transitions and transversions between DNA sequences in an alignment. The function is fairly slow (an alignment of ~100 sequences, 800 bp in length takes around 30 second...
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Colour matching feature in R

December 8, 2009 | Samuel Brown

I love R. It is an open-source statistical programming language that I found reasonably easy to learn, and find it incredibly versatile and useful. Because it's open-source anyone can contribute to it, and there are a huge number of packages that exten...
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