knitr documents with tikzDevice graphics
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Setting up tikzDevice output in knitr may be a frustrating task, but gives outstandingly aesthetic, LaTeX-like figures.
Here are my global knitr settings for typesetting documents in Polish (in UTF-8, make sure your R also runs in a Unicode locale or change inputenc according to your preferences).
Run right after \begin{document} in an .Rnw source file:
<<MainSettings,echo=FALSE,cache=FALSE,warning=FALSE,message=FALSE>>=
options(width=71)
options(digits=7)
require("knitr")
opts_knit$set(progress = FALSE, verbose = FALSE) # works better with Kile
opts_chunk$set(
keep.source=TRUE,
out.width='5in',
fig.width=5,
fig.height=5/sqrt(2),
fig.path='figures-knitr/filename-', # a unique ID here if you got
cache.path='cache-knitr/filename-', # many documents in one dir
cache=TRUE,
tidy=FALSE,
dev='tikz',
external=TRUE,
fig.align='center',
size='small'
)
options(tikzDefaultEngine = "pdftex")
options(tikzLatexPackages = c(
"\\usepackage{amsmath,amssymb,amsfonts}",
"\\usepackage{tikz}",
"\\usepackage[MeX,T1,plmath]{polski}",
"\\usepackage[utf8]{inputenc}",
"\\usepackage[T1]{fontenc}",
"\\usetikzlibrary{calc}",
"\\usepackage[polish]{babel}",
"\\selectlanguage{polish}",
"\\usepackage{standalone}"
))
options(tikzMetricsDictionary="~/R/tikzMetrics") # speeds tikz up
options(tikzDocumentDeclaration = "\\documentclass[10pt]{standalone}\n")
options(tikzMetricPackages = c(
"\\usepackage[MeX,T1,plmath]{polski}",
"\\usepackage[utf8]{inputenc}",
"\\usepackage[T1]{fontenc}",
"\\usetikzlibrary{calc}",
"\\usepackage[polish]{babel}",
"\\selectlanguage{polish}"
))
knit_theme$set(knit_theme$get("default"))
# print(knit_theme$get("default")) for more themes
@
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