QQ plot of p-values in R using base graphics
[This article was first published on Getting Genetics Done, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here)
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Update Tuesday, September 14, 2010: Fixed the ylim issue, now it sets the y axis limit based on the smallest observed p-value.
A while back Will showed you how to create QQ plots of p-values in Stata and in R using the now-deprecated sma package. A bit later on I showed you how to do the same thing in R using ggplot2. As much as we (and our readers) love ggplot2 around here, it can be quite a
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