Posts Tagged ‘ Software ’

Monday Links: 23andMe, RStudio, PacBio+Galaxy, Data Science One-Liners, Post-Linkage RFA, SSH

April 11, 2011
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Monday Links: 23andMe, RStudio, PacBio+Galaxy, Data Science One-Liners, Post-Linkage RFA, SSH

Lately I haven't written as many full length posts as usual, but here's a quick roundup of a few links I've shared on Twitter (@genetics_blog) over the last week:First, 23andMe is having a big DNA Day Sale ($108) for the kit + 1 year of their personal ...

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Comparison of compression

April 4, 2011
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Comparison of compression

I recently wrote an email with an attached LZMA archive. It was immediately answered with something like: "What are you doing? I had to boot linux to open the file!" First of all I don't care whether user of proprietary systems are able to read open formats, but this answer made me curious to know about the differences between some compression...

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Visualizing Missing Data

March 22, 2011
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Visualizing Missing Data

There are several graphics available for visualizing missing data. The following graphic was inspired by many sources. However, I wanted a version using ggplot2. What is visualized here is the percent missing for each variable in the PISA data across countries. The code will be available as part of the multilevelPSA package I am currently

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RStudio Keyboard Shortcut Reference PDF

March 21, 2011
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I recently started using RStudio, the amazing new IDE for R. You can view all of RStudio's keyboard shortcuts by going to the help menu, but I made this printable reference for myself and thought I'd share it. I only included the Windows shortcuts, and...

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RStudio Keyboard Shortcut Reference PDF

March 21, 2011
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RStudio Keyboard Shortcut Reference PDF

I recently started using RStudio, the amazing new IDE for R. You can view all of RStudio's keyboard shortcuts by going to the help menu, but I made this printable reference for myself and thought I'd share it. I only included the Windows shortcuts, and...

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New GenABEL Website, and more *ABEL software

March 18, 2011
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The *ABEL suite of R packages and software for genetic analysis has grown substantially since the appearance of GenABEL and the previously mentioned ProbABEL R packages. There are now a handful of useful R packages and other software utilities facilita...

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New GenABEL Website, and more *ABEL software

March 18, 2011
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New GenABEL Website, and more *ABEL software

The *ABEL suite of R packages and software for genetic analysis has grown substantially since the appearance of GenABEL and the previously mentioned ProbABEL R packages. There are now a handful of useful R packages and other software utilities facilita...

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La historia detrás del software: el caso de R.

Hoy en día, en cualquiera que sea nuestra área de aplicación de la estadística requiere que sepamos programar. Los software convencionales como SPSS y STATA son un tanto limitados, las actualizaciones no son tan constantes y su precio puede ser con...

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The RStudio IDE: first impressions are positive

February 28, 2011
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The RStudio IDE: first impressions are positive

Integrated development environments (IDEs) are software development tools, providing an interface that enables you to write, debug, run and view the output of your code. Whether you need an IDE or find them useful depends very much on your own preferences and style of working. In my own case for example, I’ve tried both Eclipse

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RStudio: New free IDE for R

February 28, 2011
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Just saw the announcement of the availability of Rstudio, a new (free & open source) integrated development environment for R that works on Windows, Mac, and Linux. Judging from the screenshots, it looks like Rstudio supports syntax highlighting for Sweave & easy PDF creation from Sweave code, which is something I haven't seen anywhere else (on Windows at least)....

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