357 search results for "ANOVA"

Two-Way PERMANOVA (with Vegan-Function adonis) Using Customized Contrasts

August 8, 2011
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Two-Way PERMANOVA  (with Vegan-Function adonis) Using Customized Contrasts

...say you have a multivariate dataset and a two-way factorial design - you do a PERMANOVA and the aov-table (adonis is using ANOVA or "sum"-contrasts) tells you there is an interaction - how to proceed when you want to go deeper into the ana...

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Legendre & Borcard: Nested ANOVA by Permutation

May 30, 2011
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Legendre & Borcard: Nested ANOVA by Permutation

..here's a very illustrative R-Script example by Legendre & Borcard showing how a Nested ANOVA can be done by permutation.Read more »

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One-way ANOVAs in R – including post-hocs/t-tests and graphs

May 11, 2011
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One-way ANOVAs in R – including post-hocs/t-tests and graphs

In this post, I go over the basics of running an ANOVA using R. The dataset I’ll be examining comes from this website, and I’ve discussed it previously (starting here and then here). I’ve not seen many examples where someone runs through the … Continue reading →

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Adonis (PERMANOVA) – Assumptions

April 26, 2011
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Adonis (PERMANOVA) – Assumptions

Before you use PERMANOVA (R-vegan function adonis) you should read the user notes for the original program by the author (Marti J. Anderson) who first came up with this method. An important assumtption for PERMANOVA is same "multivariate spread&qu...

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R Tutorial Series: 2011 ANOVA Article Data

March 28, 2011
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R Tutorial Series: 2011 ANOVA Article Data

Having wrapped up a recent flurry of R ANOVA articles (and exhausted my knowledge of the subject), I decided to take a look at the R Tutorial Series' Google Analytics data from the past few months. Since I posted the Two-Way Omnibus ANOVA article on J...

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R Tutorial Series: 2011 ANOVA Article Data

March 28, 2011
By
R Tutorial Series: 2011 ANOVA Article Data

Having wrapped up a recent flurry of R ANOVA articles (and exhausted my knowledge of the subject), I decided to take a look at the R Tutorial Series' Google Analytics data from the past few months. Since I posted the Two-Way Omnibus ANOVA article on J...

Read more »

R Tutorial Series: Applying the Reshape Package to Organize ANOVA Data

March 14, 2011
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R Tutorial Series: Applying the Reshape Package to Organize ANOVA Data

As demonstrated in the preceding ANOVA tutorials, data organization is central to conducting ANOVA in R. In standard ANOVA, we used the tapply() function to generate a table for a single summary function. In repeated measures ANOVA, we used separate da...

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R Tutorial Series: Applying the Reshape Package to Organize ANOVA Data

March 14, 2011
By
R Tutorial Series: Applying the Reshape Package to Organize ANOVA Data

As demonstrated in the preceding ANOVA tutorials, data organization is central to conducting ANOVA in R. In standard ANOVA, we used the tapply() function to generate a table for a single summary function. In repeated measures ANOVA, we used separate da...

Read more »

R Tutorial Series: ANOVA Pairwise Comparison Methods

March 7, 2011
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R Tutorial Series: ANOVA Pairwise Comparison Methods

When we have a statistically significant effect in ANOVA and an independent variable of more than two levels, we typically want to make follow-up comparisons. There are numerous methods for making pairwise comparisons and this tutorial will demonstrate...

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R Tutorial Series: ANOVA Pairwise Comparison Methods

March 7, 2011
By
R Tutorial Series: ANOVA Pairwise Comparison Methods

When we have a statistically significant effect in ANOVA and an independent variable of more than two levels, we typically want to make follow-up comparisons. There are numerous methods for making pairwise comparisons and this tutorial will demonstrate...

Read more »

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