(This article was first published on Getting Genetics Done, and kindly contributed to R-bloggers)
R is a great tool with lots of resources for genetics, genome-wide association studies, and many other biological applications. We've covered several places to find help in R in the past, but if you're still apprehensive about diving into R's command-line interface, fear not. The R commander is a graphical user interface (GUI) for R that works under Windows, Linux, and Mac. It features a data
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Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).