(This article was first published on Recology, and kindly contributed to R-bloggers)
Sorry for the temporary loss of GitHub gists...Hopefully dynamic views will support javascript soon!!
To leave a comment for the author, please follow the link and comment on his blog: Recology.
R-bloggers.com offers daily e-mail updates about R news and tutorials on topics such as: visualization (ggplot2, Boxplots, maps, animation), programming (RStudio, Sweave, LaTeX, SQL, Eclipse, git, hadoop, Web Scraping) statistics (regression, PCA, time series, trading) and more...

Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).