New food web dataset

October 14, 2011 | Scott Chamberlain

So, there is a new food web dataset out that was put in Ecological Archives here, and I thought I would play with it. The food web is from Otago Harbour, an intertidal mudflat ecosystem in New Zealand. The web contains 180 nodes, with 1,924 links. Fu...
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basic ggplot2 network graphs – ver2

March 23, 2011 | Scott Chamberlain

I posted last week a simple function to plot networks using ggplot2 package. Here is version 2. I still need to work on figuring out efficient vertex placement.Changes in version 2:-You have one of three options: use an igraph object, a matrix, or a da...
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basic ggplot2 network graphs

March 17, 2011 | Scott Chamberlain

I have been looking around on the web and have not found anything yet related to using ggplot2 for making graphs/networks. I put together a few functions to make very simple graphs. The bipartite function especially is not ideal, as of course we only w...
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Bipartite networks and R

January 14, 2011 | Scott Chamberlain

Earlier, I posted about generating networks from abundance distributions that you specify. If this post was interesting, check out Jeff Kilpatrick's website, where he provides code he produced in R and Octave to compare real bipartite networks to ones ...
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Co-authorship Network of SSRN Conflict Studies eJournal

November 10, 2010 | Drew Conway

As part of my on-going research simulating network structure using graph motifs I have been collecting novel data sets to test and benchmark the method. Since I am a political scientist studying conflict, it was suggested to me to collect a co-authorship network within this sub-discipline. Such a network is ... [Read more...]

Installing ‘intergraph’ package

September 17, 2010 | Michal

After some e-mails I decided to put together a bit more detailed instruction how to install the ‘intergraph’ package together with the namespaced version of the ‘network’ package. See here. There seemed to be some problems with downloading the namespaced ‘network’ from my webstite (thanks Neil!). File permissions were set ... [Read more...]

Namespaces and name conflicts

August 31, 2010 | Michal

R packages ‘igraph’ and ‘network’ are good examples of two R packages providing similar but complementary functionalities for which there are a lot of name conflicts. As for now the ‘igraph’ package has a namespace while the ‘network’ package (version 1.4-1) does not. This became an issue when I was ... [Read more...]

From igraph to network and back again

August 25, 2010 | Michal

In an effort to achieve this (last paragraph), I created a couple of functions to coerce networks as ‘igraph’ objects to networks as ‘network’ objects and vice versa. I wrapped them into a package called ‘intergraph’ which I just uploaded to my personal miniCRAN. Please mind, this is still an ... [Read more...]

useR! 2010 conference videos

August 12, 2010 | Szilard

Videos of the invited talks of the useR! 2010 conference as follows (courtesy by Kate Mullen and NIST). This site also aims at collecting the materials (video, slides, R code) of local R users group (RUG) meetings and various other … Continue reading →
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Social contagion? Maybe not…

July 28, 2010 | Michal

Recently there was a lot of racket about results presented in papers by a pair Nicholas Christakis & James Fowler. Their papers gained a lot of attention both in the academic world as well as in media. In their papers they claim to provide evidence for social contagion (transmission through social ... [Read more...]

What Social Network Analysis software do you use?

May 12, 2010 | Michal

See a the poll here by Gabriel Rossman at Code and Culture. I voted for R and ‘igraph’. If you use R you are getting access to all the other wonderful things that come with R. Using specialized package, like Pajek, UCINET etc requires constant going back and forth between ... [Read more...]

Experiments with igraph

April 21, 2010 | nsaunders

Networks – social and biological – are all the rage, just now. Indeed, a recent entry at Duncan’s QOTD described the “hairball” network representation as the dominant cultural icon in molecular biology. I’ve not had occasion to explore networks “professionally”, but have always been fascinated by both networks and the ...
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Advanced SNA with R, via Harvard Political Nets Conference

December 7, 2009 | Drew Conway

End of semester madness has begun, so posting will likely be light this week. To keep you busy, David Lazer recently posted the five video series of the Goudreau-Hunter tutorial on social network analysis using R from the 2009 Harvard Political Networks Conference. Each video run about 60 minutes, so these will ... [Read more...]

rgraph6 on R-Forge

September 4, 2008 | Michal

I have moved my rgraph6 R package to R-Forge. R-Forge is a website that facilitates development of R packages by providing services for version control (through Subversion), automatic checking and building of the packages including binaries for Windows and MacOS, as well as for collaboration with other R users/developers. ... [Read more...]

ERGMs in R

January 23, 2008 | Michal

Developers of statnet, a collection of packages for R for fitting Exponential Random Graph Models (ERGM), issued a major update. First change is that the main package is now called ergm. Secondly, a set of additional packages has been made available. Apart from package network, that provides a class system ... [Read more...]

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