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The following fully-automatic Bash script downloads, compiles, and initializes compcache version 0.6.2 on Ubuntu Karmic Koala (9.10). This script creates two swaps with a maximum of 4GB uncompressed size each. Two swaps are used to take advantage of 2 CPUs (or CPU cores in a multicore CPU). Compcache is a fascinating memory compression ... [Read more...]

The first post on Getting Genetics Done was one year ago today. To celebrate, here are the top 10 most viewed posts since GGD launched last year. Incidentally, nine of the ten are tutorials on how to do something in R. Thanks to all the readers and all... [Read more...]

This tutorial covers profiling of Linux servers using open-source tools such as "iostat", "oprofile" and "blktrace". Both processor-bound and I/O-bound cases are covered, and the emphasis is on tools that provide visual displays of relevant metrics. Li... [Read more...]

Download "Getting Started with the Social Media Analytics Research Toolkit" (pdf, 1.25 megabytes) Download the Social Media Analytics Research Toolkit Disclosure As you probably know, I live in the Portland, Oregon area and have for many years. One of ... [Read more...]

Download "Getting Started with the Social Media Analytics Research Toolkit" (pdf, 1.25 megabytes) Download the Social Media Analytics Research Toolkit Media Inactivist, Thought Follower, Sit-Down Comic, Social Media Analytics Researcher, Former Boy Gen... [Read more...]

Download Code Like A Pirate - The #rstats Appliance from the SUSE Gallery  The R programming language was featured about a year ago in a New York Times article (http://bit.ly/iaqQ). I've been an R user since 2000, so I've collected some resources ... [Read more...]

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i usually run long simulations in R on a remote server. i’ve read an article on linux journal about emailing yourself after something happens…i forgot. since my jobs are long, and i usually have to run multiple jobs sequentially, it’d be nice to look at my results ... [Read more...]

Every year, I single out what I think are the Top Five open source projects. This year, there's only one hold-over from previous years, and it's likely that I'm just going to give it a Lifetime Achievement Award and pick five others next year. 5. NetBe... [Read more...]

topsyWidgetPreload({ "url": "http%3A%2F%2Fborasky-research.net%2F2009%2F10%2F14%2Fwhats-happening-man%2F", "style": "big", "title": "What's Happening, Man?" }); There is quite a bit of activity on the AlgoCompSynth front. As you may know, I’m a SUSE Studio subscriber, and I’m building openSUSE 11.1-based appliances there. One of ... [Read more...]

so recently i’m learning how to compile and cross-compile R packages from source for windows machines, which means i have to create windows binaries. the first option is to build on a windows system, and the 2nd is to cross-build on an intel-based linux or mac system. i will ... [Read more...]

I don’t know how, but somehow, i stumbled on how to do this. I’ve always used emacs with ESS to run R, since spring 2006 (did it on windows, switched to linux, for years, and most recently, on my macbook). I liked this because i get the same usual ... [Read more...]

It’s been a long time since I posted here, for a number of reasons: Change of focus from Ruby programming to Linux capacity planning, especially in the realm of I/O subsystems. You’ll find more about that at http://linuxcapacityplanning.com... [Read more...]

JAGS was developed to help those non-Window users to be able to use BUGS. However, I found it is very hard to install JAGS and its R package-rjags. Here is my note on how to install JAGS and rjags in Fedora 10. The note here should work for all Linu... [Read more...]

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