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About one year ago, I seriously started migrating from SPSS to R. Though I’m still using SPSS (because I have to in some situations), I’m quite comfortable and happy with R now and learnt a lot in the past months. But since SPSS is still very wide spread in social sciences, I get asked every now and then, whether I really needed to learn R, because SPSS meets all my needs…

Well, learning R had at least two major benefits for me: 1.) I could improve my statistical knowledge a lot, simply by using formulas, asking why certain R commands do not automatically give the same results like SPSS, reading R resources and papers etc. and 2.) the possibilities of data visualization are way better in R than in SPSS (though SPSS can do well as well…). Of course, there are even many more reasons to use R.

Still, one thing I often miss in R is a beautiful output of simple statistics or maybe even advanced statistics. Not always as plot or graph, but neither as “cryptic” console output. I’d like to have a simple table view, just like the SPSS output window (though the SPSS output is not “beautiful”). That’s why I started writing functions that put the results of certain statistics in HTML tables. These tables can be saved to disk or, even better for quick inspection, shown in a web browser or viewer pane (like in RStudio viewer pane).

All of the following functions are available in my sjPlot-package on CRAN.

**(Generalized) Linear Models**

The first two functions, which I already published last year, can be used to display (generalized) linear models and have been described here. Yet I want to give another short example for quickly viewing at linear models:

require(sjPlot) # load package # Fit "dummy" models. Note that both models share the same predictors # and only differ in their dependent variable data(efc) # fit first model fit1 <- lm(barthtot ~ c160age + c12hour + c161sex + c172code, data=efc) # fit second model fit2 <- lm(neg_c_7 ~ c160age + c12hour + c161sex + c172code, data=efc) # Print HTML-table to viewer pane sjt.lm(fit1, fit2, labelDependentVariables=c("Barthel-Index", "Negative Impact"), labelPredictors=c("Carer's Age", "Hours of Care", "Carer's Sex", "Educational Status"), showStdBeta=TRUE, pvaluesAsNumbers=TRUE, showAIC=TRUE)

This is the output in the RStudio viewer pane:

**Frequency Tables**

Another (new) function is `sjt.frq`

which prints frequency tables (the next example uses value and variable labels, but the simplest function call is just `sjt.frq(variable)`

).

require(sjPlot) # load package # load sample data data(efc) # retrieve value and variable labels variables <- sji.getVariableLabels(efc) values <- sji.getValueLabels(efc) # simple frequency table sjt.frq(efc$e42dep, variableLabels=variables['e42dep'], valueLabels=values[['e42dep']])

And again, this is the output in the RStudio viewer pane:

You can print frequency tables of several variables at once:

sjt.frq(as.data.frame(cbind(efc$e42dep, efc$e16sex, efc$c172code)), variableLabels=list(variables['e42dep'], variables['e16sex'], variables['c172code']), valueLabels=list(values[['e42dep']], values[['e16sex']], values[['c172code']]))

When applying SPSS frequency tables, especially for variable with many unique values (e.g. age or income), this often results in very long, unreadable tables. The `sjt.frq`

function, however, can automatically group variables with many unique values:

sjt.frq(efc$c160age, variableLabels=list("Carer's Age"), autoGroupAt=10)

This results in a frequency table with max. 10 groups:

You can also specify whether the row with median value and both upper and lower quartile are highlighted. Furthermore, the complete HTML-code is returned for further use, separated into style sheet and table content. In case you have multiple frequency tables, the function returns a list with HTML-tables.

**Contingency Tables**

The second new function in the sjPlot-package (while I’m writing this posting, source code and windows binaries of version 1.1 are available, Mac binaries will follow soon…) is `sjt.xtab`

for printing contingency tables.

The simple function call prints observed values and cell percentages:

# prepare sample data set data(efc) efc.labels <- sji.getValueLabels(efc) sjt.xtab(efc$e16sex, efc$e42dep, variableLabels=c("Elder's gender", "Elder's dependency"), valueLabels=list(efc.labels[['e16sex']], efc.labels[['e42dep']]))

Observed values are obligatory, while cell, row and column percentages as well as expected values can be added via parameters. An example with all possible information:

sjt.xtab(efc$e16sex, efc$e42dep, variableLabels=c("Elder's gender", "Elder's dependency"), valueLabels=list(efc.labels[['e16sex']], efc.labels[['e42dep']]), showRowPerc=TRUE, showColPerc=TRUE, showExpected=TRUE)

And a simple one, w/o horizontal lines:

sjt.xtab(efc$e16sex, efc$e42dep, variableLabels=c("Elder's gender", "Elder's dependency"), valueLabels=list(efc.labels[['e16sex']], efc.labels[['e42dep']]), showCellPerc=FALSE, showHorizontalLine=FALSE)

All colors can be specified via parameters, as well as the constant string values. See `?sjt.frq`

resp. `?sjt.xtab`

for detailed information.

If you have more ideas on which “quick” statistics are suitable for printing the results in the viewer pane, let me know. I will try to include them into my package…

Tagged: data visualization, R, rstats, SPSS, Statistik

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