Circle packing in R (again)

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Back in 2010 I posted some R code for circle packing. Now, just five years later, I’ve ported the code to Rcpp and created a little package which you can find at GitHub.

The main function is circleLayout which takes a set of overlapping circles and tries to find a non-overlapping arrangement for them. Here’s an example:

And here’s the code:


# Create some random circles, positioned within the central portion
# of a bounding square, with smaller circles being more common than
# larger ones.

ncircles <- 200
limits <- c(-50, 50)
inset <- diff(limits) / 3
rmax <- 20

xyr <- data.frame(
x = runif(ncircles, min(limits) + inset, max(limits) - inset),
y = runif(ncircles, min(limits) + inset, max(limits) - inset),
r = rbeta(ncircles, 1, 10) * rmax)

# Next, we use the `circleLayout` function to try to find a non-overlapping
# arrangement, allowing the circles to occupy any part of the bounding square.
# The returned value is a list with elements for the layout and the number
# of iterations performed.

library(packcircles)

res <- circleLayout(xyr, limits, limits, maxiter = 1000)
cat(res$niter, "iterations performed")

# Now draw the before and after layouts with ggplot

library(ggplot2)
library(gridExtra)

## plot data for the `before` layout
dat.before <- circlePlotData(xyr)

## plot dta for the `after` layout returned by circleLayout
dat.after <- circlePlotData(res$layout)

doPlot <- function(dat, title)
ggplot(dat) +
geom_polygon(aes(x, y, group=id), colour="brown", fill="burlywood", alpha=0.3) +
coord_equal(xlim=limits, ylim=limits) +
theme_bw() +
theme(axis.text=element_blank(),
axis.ticks=element_blank(),
axis.title=element_blank()) +
labs(title=title)

grid.arrange(
doPlot(dat.before, "before"),
doPlot(dat.after, "after"),
nrow=1)

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