Articles by rstats | LIBD rstats club

Using VisiumExperiment at spatialLIBD package

November 5, 2020 | rstats | LIBD rstats club

By Brenda Pardo A month ago, I started an enriching adventure by joining Leonardo Collado-Torres’ team at Lieber Institute for Brain Development. Since then, I have been working on modifying spatialLIBD, a package to interactively visualize the LIBD human dorsolateral pre-frontal cortex (DLPFC) spatial transcriptomics data (Maynard, Collado-Torres, Weber, Uytingco, ... [Read more...]

Using Space Ranger at JHPCE

October 19, 2020 | rstats | LIBD rstats club

By Nick Eagles As part of recent LIBD work with spatial gene expression, I recently was recommended the tool Space Ranger, which provides software pipelines walking Visium spatial RNA-seq samples through the steps we ultimately need to explore gene expression coupled with spatial information. In this blog post, I’ll ... [Read more...]

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