January 2016

The guide

January 4, 2016 | Gianluca Baio

Before and over the Christmas break, Christina and I have done some more work on our bmeta package, which I've already mentioned in another post, here $-$ well, to be fair, Christina has done most of the work; I was being annoying suggesting changes to the maths formatting and thinking ... [Read more...]

The guide

January 4, 2016 | Gianluca Baio

Before and over the Christmas break, Christina and I have done some more work on our bmeta package, which I've already mentioned in another post, here $-$ well, to be fair, Christina has done most of the work; I was being annoying suggesting chang... [Read more...]

Faster Admin 1 Maps in Choroplethr

January 4, 2016 | Ari Lamstein

A new version of ChoroplethrAdmin1 is now on CRAN, and it dramatically speeds up making Administrative Level 1 maps in choroplethr. “Administrative Level 1” is just a generic term for “1st subnational division”. In the US this is called a State, in Canada it’s called a Province, and so on. Overall, ...
[Read more...]

Data frame exercises

January 4, 2016 | r-exercises

In the exercises below we cover the basics of data frames. Before proceeding, first read section 6.3.1 of An Introduction to R, and the help pages for the cbind, dim, str, order and cut functions. Answers to the exercises are available here. Exercise 1 Create the following data frame, afterwards invert Sex ... [Read more...]

GO analysis using clusterProfiler

January 3, 2016 | R on Guangchuang Yu

clusterProfiler supports over-representation test and gene set enrichment analysis of Gene Ontology. It supports GO annotation from OrgDb object, GMT file and user’s own data. support many species In github version of clusterProfiler, enrichGO and gseGO functions removed the parameter organism and add another parameter OrgDb, so that any ...
[Read more...]

subset vs array indexing: which will cause the least grief in R?

January 3, 2016 | Derek Jones

The comments on my post outlining recommended R usage for professional developers were universally scornful, with my proposal recommending subset receiving the greatest wrath. The main argument against using subset appeared to be that it went against existing practice, one comment linked to Hadley Wickham suggesting it was useful in ... [Read more...]

Sampling Arbitrary data

January 3, 2016 | Sam Weiss

Introduction:Generating data usually requires a variance - covariance matrix and is therefore restricted by using a linear assumption between the variables. However, using a linear assumption between data can miss important non - linear relationships. ... [Read more...]

The guide

January 3, 2016 | R on Gianluca Baio

Before and over the Christmas break, Christina and I have done some more work on our bmeta package, which I’ve already mentioned in another post, here $-$ well, to be fair, Christina has done most of the work; I was being annoying suggesting changes to the maths formatting and ...
[Read more...]

Color Quantization in R

January 3, 2016 | Ryan Walker

In this post, we'll look at a simple method to identify segments of an image based on RGB color values. The segmentation technique we'll consider is called color quantization. Not surprisingly, this topic lends itself naturally to visualization and R makes it easy to render some really cool graphics for ... [Read more...]

A plot of ‘Who works at home’

January 3, 2016 | Wingfeet

I ran across this post containing displays on who works from home. I must say it looks great and is interactive but it did not help me understand the data. So I created this post to display the same data with a boring plot which might help me. For those ... [Read more...]

A plot of ‘Who works at home’

January 3, 2016 | Wingfeet

I ran across this post containing displays on who works from home. I must say it looks great and is interactive but it did not help me understand the data. So I created this post to display the same data with a boring plot which might help me. For... [Read more...]

Where Bagging Might Work Better Than Boosting

January 2, 2016 | statcompute

In the previous post (https://statcompute.wordpress.com/2016/01/01/the-power-of-decision-stumps), it was shown that the boosting algorithm performs extremely well even with a simple 1-level stump as the base learner and provides a better performance lift than the bagging algorithm does. However, this observation shouldn’t be generalized, which would be ... [Read more...]

This Is the Place, Apparently

January 2, 2016 | Julia Silge

My family and I moved to Utah about 5 years ago and we have found ourselves thoroughly in love in with our new home state. I didn’t know much about it before we began the process of contemplating a move here, and I find that is often true of many ... [Read more...]
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