November 2015

The R-Podcast Episode 14: Tips and Tricks for using R-Markdown

November 18, 2015 | Eric

The R-Podcast is back up and running! In this episode I discuss some useful resources and helpful tips/extensions that have greatly enhanced my work flow in creating reproducible analysis documents via R-Markdown. I also highlight some exciting new endeavors in the R community as well as provide my take ... [Read more...]

New R plot preferences and improvements for the R editor in Bio7

November 18, 2015 | » R

18.11.2015 In the current release of Bio7 2.3  two new plot preferences are available to automatically plot data with the size of the visible display (as an image) or with the size of available ImageSizeX and ImageSizeY R workspace variables. The second option is handy if you transfer images from ImageJ to ... [Read more...]

R Markdown senior thesis template

November 17, 2015 | chesterismay

“Science is reportedly in the middle of a reproducibility crisis.” This is the claim of quite a few these days including an article from ROpenSci which directly references another article by The Conversation. But what is “reproducible research” and how … Continue reading → [Read more...]

Creating nice tables using R Markdown

November 17, 2015 | chesterismay

One of the neat tools available via a variety of packages in R is the creation of beautiful tables using data frames stored in R. In what follows, I’ll discuss these different options using data on departing flights from Seattle … Continue reading → [Read more...]

Deep Learning with MXNetR

November 17, 2015 | - R stats

Deep learning has been an active field of research for some years, there are breakthroughs in image and language understanding etc. However, there has not yet been a good deep learning package in R that offers state-of-art deep learning models and the real GPU support to do fast training on ...
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PubMed search Shiny App using RISmed

November 17, 2015 | Aaron Gowins

In part one of a series of tutorials, we will develop a Shiny App for performing analysis of academic text from PubMed. There’s no shortage of great tutorials for developing a Shiny App using R, including Shiny’s own tutorial. Here at datascience+ we have a perfect introduction by ... [Read more...]

RcppAnnoy 0.0.7

November 16, 2015 | Thinking inside the box

A new version of RcppAnnoy, our Rcpp-based R integration of the nifty Annoy library by Erik, is now on CRAN. Annoy is a small, fast, and lightweight C++ template header library for approximate nearest neighbours. This release mostly just catches up w... [Read more...]

New surveys show continued popularity of R

November 16, 2015 | David Smith

Two recent surveys — one based on LinkedIn skills data, and another a direct survey of data miners — show that R remains the most popular software for statistical data analysis. In a study of skills associated with LinkedIn profiles by RJmetrics (and also reported on Forbes), "data analysis" was unsurprisingly the ... [Read more...]

Profile Likelihood

November 16, 2015 | arthur charpentier

Consider some simulated data __ set.seed(1) __ x=exp(rnorm(100)) Assume that those data are observed i.id. random variables with distribution, with . The natural idea is to consider the maximum likelihood estimator For instance, consider some maximum likelihood estimator, __ library(MASS) __ (F=fitdistr(x,"gamma")) shape rate 1.4214497 0.8619969 (0.1822570) (0.1320717) __ F$estimate[1]+c(... [Read more...]

Comment on Overnight SPY Anomaly

November 16, 2015 | Joshua Ulrich

This post is in response to Michael Harris' Price Action Lab post, where he uses some simple R code to evaluate the asymmetry of returns from the day's close to the following day's open.  I'd like to respond to his 3 notes, which I've included below.The R backtest assumes fractional ... [Read more...]
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