October 2015

RuleFit: When disassembled trees meet Lasso

October 3, 2015 | Christoph Molnar

The RuleFit algorithm from Friedman and Propescu is an interesting regression and classification approach that uses decision rules in a linear model.RuleFit is not a completely new idea, but it combines a bunch of algorithms in a clever way. RuleFit consists of two components: The first component produces "rules" ... [Read more...]

The Future of R (the good, bad, and ugly)

October 3, 2015 | bryce

On a day to day basis, I use the R programing language more than any other language (e.g Python, Java, Fortran, Matlab…), and there is a good reason for it: R excels at the sort of work I do. It has been extremely well suited to my modeling work, ... [Read more...]

Text Mining the NZ Road Network with R

October 2, 2015 | Andrew Worsley

What are the most common words in New Zealand road names? Are there any common themes? Thankfully, New Zealand’s 73,906 current road names have been made available through the LINZ Data Service. To answer the questions above, we can use R’s tm package to conduct basic text mining. The ...
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Delta Method Confidence Bands for Gaussian Density

October 2, 2015 | BioStatMatt

During one of our Department's weekly biostatistics "clinics", a visitor was interested in creating confidence bands for a Gaussian density estimate (or a Gaussian mixture density estimate). The mean, variance, and two "nuisance" parameters, were simultaneously estimated using least-squares. Thus, the approximate sampling variance-covariance matrix (4x4) was readily available. The ... [Read more...]

A Simpler Explanation of Differential Privacy

October 2, 2015 | Nina Zumel

Differential privacy was originally developed to facilitate secure analysis over sensitive data, with mixed success. It’s back in the news again now, with exciting results from Cynthia Dwork, et. al. (see references at the end of the article) that apply results from differential privacy to machine learning. In this ...
[Read more...]

Hadley Wickham’s "Ask Me Anything" on Reddit

October 2, 2015 | David Smith

Hadley Wickham, RStudio's Chief Scientist and prolific author of R books and packages, conducted an AMA (Ask Me Anything) session on Reddit this past Monday. The session was tremendously popular, generating more than 500 questions/comments and promoting the AMA to the front page of Reddit. If you're not familiar with ... [Read more...]

R, Open Source and GSoC

October 2, 2015 | Believer21

There’s a plethora of generic content regarding GSoC preparation already available on the internet.* This blog post will concentrate on specific tips which should help anyone looking to get involved with The R-Project, or any R-centric Open-Source project, begin their journey. *The post assumes basic programming knowledge (loops, functions, ...
[Read more...]

London Vs Boston

October 2, 2015 | Mango Blogger

By Paulin Shek Following the great success of the EARL conference in London earlier this month, our attention now turns to EARL Boston which will take place between 2-4th November just across the pond; the competition is already on to … Continue reading → [Read more...]

Jug: Easily Create R APIs

October 2, 2015 | FishyOperations

Jug stands for Just Unified Galloping. Okay, okay, it’s just a play on words coming from a Flask (Python) background. Jug is my attempt to create a simple small web framework that allows you to turn your (existing) R functions into an API. Having the wonderful httpuv package at ... [Read more...]

R + htmlwidgets + DT + sparkline

October 1, 2015 | Matt Leonawicz

Here are some examples with code where I use the R packages DT and sparkline to produce interactive data tables and inline graphs as well as inline graphs within data table cells. Both packages utilize the htmlwidgets package to interface with javascript libraries. With htmlwidgets you can create custom widgets ... [Read more...]

R User Groups Highlight R Creativity

October 1, 2015 | Joseph Rickert

by Joseph Rickert I have been a big fan of R user groups since I attended my first meeting. There is just something about the vibe of being around people excited about what they are doing that feels good. From a speaker's perspective, presenting at an R user Group meeting ... [Read more...]

ChIPseq data mining with ChIPseeker

October 1, 2015 | R on Guangchuang Yu

ChIP-seq is rapidly becoming a common technique and there are a large number of dataset available in the public domain. Results from individual experiments provide a limited understanding of chromatin interactions, as there is many factors cooperate to regulate transcription. Unlike other tools that designed for single dataset, ChIPseeker is ...
[Read more...]

rleafmap: R Markdown in interactive popups

October 1, 2015 | franzk

This is the second « big » feature coming with branch 0.2 of rleafmap (now on CRAN!). With this new version you can write popups content in R Markdown which will be processed when you generate the map. This can be useful … Lire la suite → [Read more...]
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