July 2015

LaTeX Thesis Template

July 13, 2015 | "Mauricio Vargas S. 帕夏"

For my thesis I've created a LaTeX template according to my university's rules. If you don't know \(\rm\LaTeX\) you can check a quick tutorial that I made for my students. My thesis was written in english but this template is in spanish. The idea of the template is that ... [Read more...]

RSiteCatalyst Version 1.4.4 Release Notes

July 13, 2015 | Randy Zwitch

It’s been about six months since the last RSiteCatalyst update, and this update is really just a single bug fix, but a big bug fix at that! Sparse Data = Opaque Error Messages Numerous people have reported receiving an error message from RSiteCatalyst similar to the following: 'names' attribute [1] must ... [Read more...]

RcppGSL 0.2.5

July 13, 2015 | Thinking inside the box

A new version of RcppGSL arrived on CRAN a couple of days ago. This package provides an interface from R to the GNU GSL using our Rcpp package. In the course of preparation for the higher-performance R via C++ course I gave in Zuerich last month, I o... [Read more...]

ChIPseeker: an R/Bioconductor package for ChIP peak annotation, comparison and visualization

July 12, 2015 | R on Guangchuang Yu

My R/Bioconductor package, ChIPseeker, published in Bioinformatics. ChIPseeker had been cited by http://www.biomedcentral.com/1471-2164/16/292 and http://www.jbc.org/content/early/2015/06/18/jbc.M115.668558.short, and was used (not cited) in http://nar.oxfordjournals.org/content/early/2015/06/27/nar.gkv642.abstract and http://emboj.embopress.org/content/early/2014/12/18/...
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RcppRedis 0.1.4

July 12, 2015 | Thinking inside the box

A small update to RcppRedis arrived on CRAN a few days ago. One of the unit tests failed as we (still) initialized the rredis package (loaded only for a comparison) in a form long-internalized by Bryan Lewis, its author. No actual changes to function... [Read more...]

Detecting Undercuts in F1 Races Using R

July 11, 2015 | Tony Hirst

One of the things that’s been on my to do list for some time has been the identification of tactical or strategic events within a race that might be detected automatically. One such event is an undercut described by F1 journalist James Allen in the following terms (The secret ... [Read more...]

random 0.2.5

July 11, 2015 | Thinking inside the box

A few days ago and while we were traveling, an updated release of our random package for truly (hardware-based) random numbers as provided by random.org arrived on CRAN. Brian Ripley had pointed out to us that some of the curl implementations (which ... [Read more...]

Estimating data parameters using R

July 11, 2015 | Mic

Say we have some data and we are pretty confident that it comes from a random variable which follows a Normal distribution, now we would like to estimate the parameters of that distribution. Since the best estimator for the population mean is the sampl...
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CDK Literature #8

July 11, 2015 | Egon Willighagen

Tool validationThe first paper this week is a QSAR paper. In fact, it does some interesting benchmarking of a few tools with a data set of about 6000 compounds. It includes looking into the applicability domain, and studies the error of prediction for compounds inside and outside the chemical space defined ... [Read more...]

Hypothesis testing on normally distributed data in R

July 11, 2015 | Mic

Hypothesis testing is a useful statistical tool that can be used to draw a conclusion about the population from a sample. Say for instance that you are interested in knowing if the average value of a certain parameter differs significantly from a given value within a well defined confidence level: ...
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Constructing a Word Cloud for ICML 2015

July 10, 2015 | Andrew Collier

Word clouds have become a bit cliché, but I still think that they have a place in giving a high level overview of the content of a corpus. Here are the steps I took in putting together the word cloud for the International Conference on Machine Learning (2015). Extract the hyperlinks ... [Read more...]

In case you missed it: June 2015 roundup

July 10, 2015 | David Smith

In case you missed them, here are some articles from June of particular interest to R users. The R Consortium, a trade group dedicated to the support and growth of the R Community, has launched with the R Foundation, Microsoft, RStudio and others as founding members. A detailed FAQ for ... [Read more...]
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