(This article was first published on John B. Cole's Big Blog O' Science » John B. Cole's Big Blog O' Science, and kindly contributed to R-bloggers)
In the comments several people have asked about the structure of my data. The structure of my data is such that I have to merge several things together to get the final data assembled, which I think is obscuring how I actually get the Manhattan plot. I cannot post my data, but I am preparing a set of simulated data that I can use to demonstrate what I've done. Please give me a day or two, and I think that you'll be happy with the results.
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Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).
