Posts Tagged ‘ packages ’

Simplify working with times and dates in R

March 16, 2012
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R has some very powerful built-in features for working with dates, times, and time-zones. But power and flexibility rarely correlate with ease-of-use, and this is no exception. The lubridate package comes to the rescue, make things a bit easier when working with chronological data in R. The paper Dates and Times Made Easy with lubridate provides in-depth explanations of...

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New data visualization features in ggplot2 update

March 2, 2012
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New data visualization features in ggplot2 update

Hadley Wickham has just released an update to the ggplot2 graphics package for R. Version 0.9.0 significantly speeds up the process of rendering graphics, and the documentation is much improved (including the addition of many new examples). This update also adds a bunch of new features, which are documented in this 40-page "changes and additions" guide. Here's a sampling...

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RHadoop updated: improved performance and more control

February 27, 2012
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Revolution Analytics' open-source RHadoop project, which provides integration between R and Hadoop, has been updated with the release of version 1.2 of the "rmr" package. New in this version: support for binary I/O formats, which improves on the text-only interfact by allowing use of faster and more space-efficient data formats like R's native serialization format. This version also improves...

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My first R package: parallel differential evolution

January 23, 2012
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My first R package: parallel differential evolution

Last night I was working on a difficult optimization problems, using the wonderful DEoptim package for R. Unfortunately, the optimization was taking a long time, so I thought I'd speed it up using a foreach loop, which resulted in the fo...

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Visualize your Facebook friends network with R

January 19, 2012
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Visualize your Facebook friends network with R

A few days ago, Romain François explained how to interface with the Facebook Graph API explorer with R. This was a low-level interface, giving the R programmer the ability to the raw data that Facebook can provide about your connections. Now, just four days later, the first application in R (that I know of) based on the Facebook Graph...

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RInside updated

January 18, 2012
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The RInside package provides C++ classes that make it easier to embed R in C++ code on many platforms. According to a post from package co-maintainer Dirk Eddelbuettel, the package has just been updated to version 0.2.6 with improved support on Windows, and compatibility with R's standard random number generator. You can download the latest version from CRAN or...

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December 2011 issue of the R Journal: An overview

December 20, 2011
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December 2011 issue of the R Journal: An overview

The December 2011 issue of the R Journal is now available for download. Three times a year, the open-access journal of the R project publishes peer-reviewed articles on research and applications of R and R packages. As of the latest issue, all articles are published under a Creative Commons license, making them accessible for translation, academic and commercial uses...

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rOpenSci won 3rd place in the PLoS-Mendeley Binary Battle!

November 30, 2011
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rOpenSci won 3rd place in the PLoS-Mendeley Binary Battle!

I am part of the rOpenSci development team (along with Carl Boettiger, Karthik Ram, and Nick Fabina).   Our website: http://ropensci.org/.  Code at Github: https://github.com/ropensciWe entered two of our R packages for integrating with ...

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My talk on doing phylogenetics in R

November 18, 2011
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My talk on doing phylogenetics in R

I gave a talk today on doing very basic phylogenetics in R, including getting sequence data, aligning sequence data, plotting trees, doing trait evolution stuff, etc.Please comment if you have code for doing bayesian phylogenetic inference in R.  ...

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Rdatamarket Tutorial

November 4, 2011
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The good folks at DataMarket have posted a new tutorial on using the rdatamarket package (covered here in August) to easily download public data sets into R for analysis. The tutorial describes how to install the rdatamarket package, how to extract metadata for data sets, and how to download the data themselves into R. The tutorial also illustrates a...

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