40 search results for "sandy"

from OTU table to HEATMAP!

February 23, 2013
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from OTU table to HEATMAP!

In this tutorial you will learn: what is a heatmap how to create a clean, highly customizable heatmap using heatmap.2 in the gplots package in R how to remove samples with poor output (not very many sequences) how to rearrange your samples by a metadata category how to make a color coded bar above the heatmap

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To pre-pay or not to pre-pay for gas when renting a car?

February 20, 2013
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To pre-pay or not to pre-pay for gas when renting a car?

One question we get asked a lot is whether it's worth it to pre-pay for the tank of gas when renting a car. At first, blush it seems like something you should never do. In the best case, you pay market rate for gas, and in the worst case, you pay for a tank of gas you never consume (what...

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Working with R2MLwiN Part 2

February 19, 2013
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Specifying the modelThis is the second part of a series of notes demonstrating use of the R package, R2MLwiN, an R command interface to the multilevel modelling software package, MLwiN (see the MLwiN site for getting access to MLwiN). The first set of notes showed how to get started with R2MLwiN. In these notes,...

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Scatterplot with marginal boxplots

February 3, 2013
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Scatterplot with marginal boxplots

Using R and ggplot2 to draw a scatterplot with the two marginal boxplotsDrawing a scatterplot with the marginal boxplots (or marginal histograms or marginal density plots) has always been a bit tricky (well for me anyway). The approach I take here is, first, to draw the three separate plots using ggplot2:the scatterplot;the horizontal boxplot to appear in the...

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Working with R2MLwiN Part 1

January 24, 2013
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Working with R2MLwiN Part 1

Getting started with the R2MLwiN packageWith the release of the R2MLwiN package late 2012, R users have access to another software package for running Bayesian models using Markov chain Monte Carlo (MCMC) methods. R2MLwiN is an R command interface to MLwiN, allowing users to fit multilevel models using MLwiN from within the R environment.To use R2MLwiN, MLwiN needs to...

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Getting Access data into R

January 9, 2013
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How to make your own 3-D sculpture with R

January 4, 2013
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How to make your own 3-D sculpture with R

We've mentioned before how you can use R to design 3-D objects. Now, thanks to the latest version of the rgl package, you can produce real-world 3-D objects with R as well. The rgl package has long made it possible to create virtual 3-D objects in R, and export them as animations like this: But now, package author Duncan...

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100 most read R posts in 2012 (stats from R-bloggers) – big data, visualization, data manipulation, and other languages

January 2, 2013
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100 most read R posts in 2012 (stats from R-bloggers) – big data, visualization, data manipulation, and other languages

R-bloggers.com is now three years young. The site is an (unofficial) online journal of the R statistical programming environment, written by bloggers who agreed to contribute their R articles to the site. Last year, I posted on the top 24...

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Upcoming events

November 20, 2012
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Upcoming events

New Events  Thalesians (London) 2012 November 21: Isabel Ehrlich on “Basket Options with Smile”. Abstract: Due to the distinct lack of models for basket options that remain consistent with the market smile we look at approximations that are able to accurately replicate the volatility smile. Notably we turn to the use of an Edgeworth series … Continue reading...

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R and SQLite: Part 1

November 18, 2012
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Creating SQLite databases from R