1938 search results for "rstudio"

Covcalc: Shiny App for Calculating Coverage Depth or Read Counts for Sequencing Experiments

June 1, 2016
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Covcalc: Shiny App for Calculating Coverage Depth or Read Counts for Sequencing Experiments

How many reads do I need? What's my sequencing depth? These are common questions I get all the time. Calculating how much sequence data you need to hit a target depth of coverage, or the inverse, what's the coverage depth given a set amount of sequenci...

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Recent presentations

June 1, 2016
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Recent presentations

The last month or so has been a whirlwind of awesomeness with a veritable bevvy of user group and conference talks on my part! I thought I would share the materials with you and provide some brief thoughts on how each presentation went. Sessions SQL Saturday Exeter : Stats 101 London Business Analytics (LBAG) : The post

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heatmaply: interactive heat maps (with R)

May 31, 2016
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I am pleased to announce heatmaply, my new R package for generating interactive heat maps, based on the plotly R package. tl;dr By running the following 3 lines of code: install.packages("heatmaply") library(heatmaply) heatmaply(mtcars, k_col = 2, k_row = 3) %>% layout(margin = list(l = 130, b = 40)) You will get this output in your browser … Continue reading...

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Track your local R scheduled tasks with CommandCenter2000!!!

May 29, 2016
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Track your local R scheduled tasks with CommandCenter2000!!!

There are many ways to automate your scripts running, for example using RScript, or in-R itself (and now even as an add-in for RStudio) (check all here). But after a while, it can get a bit overwhelming to track tasks and ensure they are firing as planned. In order to address this, I have developed some futuristic advanced tech that lets...

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Some useful R cheatsheets

May 29, 2016
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Some useful R cheatsheets

Given below is a list of useful cheatsheets for R: Data Wrangling in R ggplot2 Cheatsheet Shiny Cheatsheet devtools Cheatsheet markdown Cheatsheet,  reference Data Exploration Cheatsheet  

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R for Publication by Page Piccinini: Lesson 1 – R Basics

May 29, 2016
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R for Publication by Page Piccinini: Lesson 1 – R Basics

Before starting this lesson you should have completed all of the steps in Lesson 0. If you have not, go back and do the lesson now. By the end of this lesson you will be able to: Make an R Project. Commit to Git. Push to Bitbucket. Read in and manipulate data. Make a figure Lesson 1: R...

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An object has no name

May 27, 2016
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An object has no name

No, it's not a Jaqen H'ghar quote. Recently, Hadley Wickham tweeted the following image: While this image isn't included in Hadley's Advanced R book, he does discuss many of the implications there. The most significant of these is that creating a copy of an object in R doesn't consume any additional memory. (Most of the time, anyway: there are...

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DH Box – Digital Humanities Virtual Workbench

May 26, 2016
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DH Box – Digital Humanities Virtual Workbench

As well as offering digital application shelves, should libraries offer, or act as instituional sponsors of, digital workbenches? I’ve previously blogged about things like SageMathCloud, and application based learning environment, and the IBM Data Scientist Workbench, and today came across another example: DHBox, CUNY’s digital humanities lab in the cloud (wiki), which looks like it

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R for Publication by Page Piccinini: Lesson 0 – Introduction and Set-up

May 26, 2016
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R for Publication by Page Piccinini: Lesson 0 – Introduction and Set-up

The pre-first lesson focuses on setting you up with RStudio and Git. As a reminder, there are some steps you should have done before starting this lesson: Install R. If you already have R installed, be sure it is the newest version. Install RStudio. Make sure that (e.g. LaTeX) is installed. Set up Git on your local Lesson 0: Introduction...

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Early bird registration for R in Insurance closes 30 May

May 24, 2016
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Early bird registration for R in Insurance closes 30 May

Hurry! The early bird registration offer for the 4th R in Insurance conference, 11 July 2016, at Cass Business School closes 30 May.This one-day conference will focus once more on applications in insurance and actuarial science that use R, the lingua...

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