Previously in this series I looked at first the ordilabel() and then orditorp() functions in the vegan package as means to improve labelling in ordination plots. In this the third in the series I take a look at ordipointlabel().

PCA is a very common method for exploration and reduction of high-dimensional data. It works by making linear combinations of the variables that are orthogonal, and is thus a way to change basis to better see patterns in data. You either do spectral decomposition of the correlation matrix or singular value decomposition of the data

I’ve recently started experimenting with making Shiny apps, and today I wanted to make a basic app for calculating and visualizing principal components analysis (PCA). Here is the basic interface I came up with. Test drive the app for yourself using the code below or check out the the R code HERE. Above is an example of the

Last time when I read the paper “A General Regression Neural Network” by Donald Specht, it was exactly 10 years ago when I was in the graduate school. After reading again this week, I decided to code it out with SAS macros and make this excellent idea available for the SAS community. The prototype of

Generating Tables Using Pander, knitr, and Rmarkdown I use a pretty common workflow (I think) for producing reports on a day to day basis. I write them in rmarkdown using RStudio, knit them into .html and .md documents using knitr, then convert the resulting .md file to a .docx file using pander, which is really just a way of communicating with Pandoc via my R terminal. This workflow...

Sensitivity analysis is the task of evaluating the sensitivity of a model output Y to input variables (X1,…,Xp). Quite often, it is assumed that this output is related to the input through a known function f :Y= f(X1,…,Xp). Sobol indices are generalizing the coefficient of the coefficient of determination in regression. The ith first order indice is the proportion of...

(This article was first published on Learning Data Science , and kindly contributed to R-bloggers) Petit monitoring de notre observatoire des médias sur Twitter. Chez Mediapart : Le Monde Le Figaro Le parisien Vue globale Le code pour réaliser ce post : To leave a comment for the author, please follow the link and comment on their blog: Learning...

This is a ‘do over’ of a project I started while at my former employer in the fall of 2012. I presented part 1 of this framework at the FX Invest West Coast conference on September 11, 2012. I have made some changes and expanded the analysis since then. Part 2 is complete and will follow this post in...

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