269 search results for "PCA"

Sweave and pgfSweave in LyX 2.0.x (experimental)

May 25, 2011
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bout half a year ago, I wrote a post on the configuration of (pgf)Sweave and LyX, which was intended to save us some efforts in going through all the details during the configuration. Now many things have changed: LyX 2.0 has internal support for Sweave, and fortunately I have been in touch with the developers

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Eigen-who? How Can I Write About Eigen-anything and Expect You to Read?

May 25, 2011
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Eigen-who? How Can I Write About Eigen-anything and Expect You to Read?

After the very nice Convore reply @timelyportfolio some of your posts include "eigenvalue ratio plots" -- kindly tell us what they show and how they might be useful in constructing a portfolio. I felt like I should at least attempt to offer a little m...

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Publishing in Veterinary Academic Journals

May 10, 2011
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Publishing in Veterinary Academic Journals

Following the post by Arthur Charpentier (Freakonometrics), I wondered what would be the outcome considering my current engagement (veterinary medicine, epidemiology, bovine mastitis). Briefly, Arthur Charpentier’s post looked at clusters of journals publishing the same kind of papers. So I looked at 25 journals (Journal of Dairy Science, Canadian Journal of Veterinary Medicine, Preventive Veterinary

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Late to the party for R in Finance blogging

May 10, 2011
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Late to the party for R in Finance blogging

I meant to blog about the R/Finance conference during a lull, but I didn’t find too many. Unlike many conferences I’ve been to the structure of R/Finance was simple: one room and one speaker at a time. Relying on each … Continue reading →

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sab-R-metrics: Logistic Regression

May 5, 2011
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sab-R-metrics: Logistic Regression

It's been a while since my last sab-R-metrics post, and I have not gotten to the real fun stuff yet. I apologize for the long layoff, and it's likely that these will be sparse for the next couple weeks. I have had some consulting opportunities come u...

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sab-R-metrics: Logistic Regression

May 5, 2011
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sab-R-metrics: Logistic Regression

It's been a while since my last sab-R-metrics post, and I have not gotten to the real fun stuff yet. I apologize for the long layoff, and it's likely that these will be sparse for the next couple weeks. I have had some consulting opportunities come u...

Read more »

New versions of GGobi and rggobi for Windows users

April 8, 2011
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or those who have been struggling with the installation of GGobi and the rggobi package under Windows: a major update of GGobi 2.1.9 is that GTK+ has been bundled with GGobi, so the installation of GTK+ is no longer required (I recommend you to uninstall it if it is not used elsewhere in your system);

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Prune GWAS data in R

March 29, 2011
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Prune GWAS data in R

Hansong Wang, our biostats professor here at the Hawaii Cancer Center, generously gave me some R code that goes through a SNP annotation file (i.e. a mapfile) and selects SNPs that are at least a certain specified distance apart. You might want to do t...

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Prune GWAS data in R

March 29, 2011
By
Prune GWAS data in R

Hansong Wang, our biostats professor here at the Hawaii Cancer Center, generously gave me some R code that goes through a SNP annotation file (i.e. a mapfile) and selects SNPs that are at least a certain specified distance apart. You might want to do t...

Read more »

Having a problem with R-2.12.2 64-bit and "gam’ package!

March 17, 2011
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Having a problem with R-2.12.2 64-bit and "gam’ package!

While working with some pitch location data recently, I ran across something strange when using my new computer (with R-2.12.2 64-bit) versus my work computer (with R-2.11.1 x64). Both are 64-bit computers, but I got the new one for portability (it's a laptop) and speed.Anyway, I had been doing some work in the office with Pitch F/X data,...

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