2688 search results for "map"

Real-time streaming differential RNA-seq analysis with eXpress

October 31, 2013
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Real-time streaming differential RNA-seq analysis with eXpress

RNA-seq has been performed routinely for at least 5+ years, yet there is no consensus on the best methodology for analyzing this data. For example, Eduardo Eyras's group recently posted a pre-print on methods to study splicing from RNA-seq, where this ...

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Simulation of an Oxford (Undergrad) Interview Question

October 31, 2013
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Simulation of an Oxford (Undergrad) Interview Question

A friend of mine, who's an economics teacher in London, is responsible for preparing some of his students for interviews at Oxford and Cambridge. He told me that, at these schools, students have to go through a nerve-wracking...

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Finding R in a Hadoop World

October 31, 2013
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Finding R in a Hadoop World

by Joseph Rickert The following is a brief report of all things R encountered in my not quite random, but nevertheless far from determined, walk through the O'Reilly Strata / Hadoop World Conference held this week in NYC. To start off, I had the pleasure of doing a 9:00 AM Monday morning joint tutorial with Antonio Piccolboni, the principal...

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High resolution graphics with R

October 29, 2013
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High resolution graphics with R

For most purposes PDF or other vector graphic formats such as windows metafile and SVG work just fine. However, if I plot lots of points, say 100k, then those files can get quite large and bitmap formats like PNG can be the better option. I just have to be mindful of the resolution.As an example I create the following...

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Cont model – Part II

October 28, 2013
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Cont model – Part II

In my last post I have investigated properties of Cont model (you can download the paper here). Today I would like to show how we can use simulations to further simplify its analysis.First let us start with the observation that the model does not reall...

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Call them what you will

October 28, 2013
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I’ve been playing around with the R package texreg for creating combined regression tables for multiple models. It’s not the only package to do that – see here for a review – but it’s often handy to be able to generate both ascii art, latex, and html versions of the same table using almost identical

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Warning: Mac OS 10.9 Mavericks and R Don’t Play Nicely

October 27, 2013
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For some reason I was compelled to update my Mac’s OS and R on the same day. (I know…) It didn’t go well on several accounts and I mostly blame Apple. Here are the details. I updated R to version … Continue reading →

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Montreal R User Group – Dr. Ramnath Vaidyanathan on his rCharts package

October 27, 2013
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Montreal R User Group –  Dr. Ramnath Vaidyanathan on his rCharts package

Monday, October 28, 2013. 6:00pm at Notman House 51 Sherbrooke W., Montreal, QC. We are very pleased to welcome back Dr. Ramnath Vaidyanathan for a talk on interactive documents as it relates to his excellent rCharts package. Bringing a laptop to follow along is highly encouraged. I would recommend installing rCharts prior to the workshop. library(devtools) pkgs <- c(‘rCharts’, ‘slidify’, ‘slidifyLibraries’) install_github(pkgs, ‘ramnathv’, ref

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Mining Research Interests – or: What Would Google Want to Know?

October 25, 2013
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Mining Research Interests – or: What Would Google Want to Know?

I am a regular visitor of Google’s research page where they post all of their latest and upcoming scientific papers. Lately I have thought whether it would be possible to statistically extract some of the meta-information from the papers. Here’s the result of the analysis of the papers’ titles produced with just a few

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xkcd: A webcomic of the internet, small talk, meta discussions, and whimsical phantasmagoria

October 25, 2013
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xkcd: A webcomic of the internet, small talk, meta discussions, and whimsical phantasmagoria

I've recently rediscovered my affection for xkcd , and what better way to show it than to perform a data analysis on the comic's archives. In this post, we use Latent Dirichlet Allocation (LDA) to mine for topics from xkcd strips, and see if it live...

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