451 search results for "knitr"

Writing reproducibly in the open with knitr

April 7, 2012
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Writing reproducibly in the open with knitr

Sweave is something of a gold standard in reproducible research. It creates a dynamic document, written in a mix of LaTeX and R code where the results of the analysis (numbers, figures, tables) are automatically generated from the code and inserted in...

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Citations in markdown using knitr

March 24, 2012
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Citations in markdown using knitr

I am finding myself more and more drawn to markdown rather then tex/Rnw as my standard format (not least of which is the ease of displaying the files on github, particularly now that we have automatic image uploading). One thing I miss from latex is the citation commands. (I understand these can be provided to

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knitr, github, and a new phase for the lab notebook

March 21, 2012
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knitr, github, and a new phase for the lab notebook

I have recently modified the basic workflow of my lab notebook since discovering knitr. Before, I would write code files which I could track on github, push figures created by the code to flickr, and then write a notebook entry on wordpress describing what I was doing. I’d embed each figure I wanted into the

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R and presentations: a basic example of knitr and beamer

February 12, 2012
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Manually combining R code and a presentation can be quite a pain. Luckily, using tools like odfWeave, Sweave and knitr, integrating documents and R code is quite painless. In this post I want to take a look at combining the… See more ›

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Knitr is Awesome!

January 19, 2012
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I love TikZ in LaTeX and I use it exclusively when writing figures for my papers. I also use the tikzDevice package to convert all figures I create in R to TikZ code, so the font used in the text and figures is the same (and having your R figures in Ti...

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knitr: nice alternative for Sweave

December 17, 2011
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I recently discovered knitr for dynamic report generation in R. It seems like a very powerful alternative to Sweave. Particularly, I am interested in png graphic device support (it supports more than 20 graphic devices) and R code formatting.Check it o...

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knitr: Elegant, flexible and fast dynamic report generation with R

December 1, 2011
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The world has changed. You can feel it on GitHub. You can smell it on Google+. The knitr package, as an alternative tool to Sweave, has features that you have been longing for, and features that you might have never imagined. Thumb through the PDF manu...

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knitr: Elegant, flexible and fast dynamic report generation with R

December 1, 2011
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The world has changed. You can feel it on GitHub. You can smell it on Google+. For those who have been struggling with Sweave, here comes the knitr package. It has features that you have been longing for, and features that you might have never imagined. Thumb through the PDF manual to see some of

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pander 0.5.0: the next generation of markdown tables in R

October 30, 2014
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A new version of pander was just released on CRAN with 200+ commits of new features, major performance updates and some minor fixes . One of the minor technical changes, which might be major good news for the knitr users, is that there is no further need to specify asis in knitr chunks when calling pander – please...

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Visualizing the History of Epidemics

October 27, 2014
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Visualizing the History of Epidemics

I really like National Geographic. Their magazine is great, their television documentaries are done well and they helped give me a lifelong love of maps. They generate very good information and help shed light on the world we all share. So why is this graphic so awful? Let's have a look: We'll start off by

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