455 search results for "knitr"

Yihui Xie, the useR! 2014 Interview

September 1, 2014
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In science consensus is irrelevant. What is relevant is reproducible results. The greatest scientists in history...

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Yet another R package primer

August 28, 2014
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Yet another R package primer

Hadley Wickham is writing what will surely be a great book about the basics of R packages. And Hilary Parker wrote a very influential post on how to write an R package. So it seems like that topic is well covered. Nevertheless, I’d been thinking for some time that I should write another minimal tutorial

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David Smith, the useR! 2014 Interview

August 25, 2014
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David Smith, the useR! 2014 Interview

“At one point, the only source for daily R news was David Smith’s blog.” —...

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Announcing dtupdate v1.0 – R Package Reporter/Updater for the devtools Universe

August 21, 2014
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The dtupdate package has functions that attempt to figure out which packages have non-CRAN versions (currently only looks for github ones) and then tries to figure out which ones have updates (i.e. the github version is > local version). It provides an option (not recommended) to auto-update any packages with newer development versions. The reason auto updating is...

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An Idiot Learns Bayesian Analysis: Part 3

August 9, 2014
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An Idiot Learns Bayesian Analysis: Part 3

A week or so ago, the grand Magus over at lamages.blogspot.com/ published a great, quick thought exercise taken from Daniel Kahneman’s book Thinking, Fast and Slow. Here are the particulars of the problem: you’re in a community with two different color vehicles; 85% are green and 15% are blue. A vehicle was involved in a

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Format Markdown Documents in R

July 29, 2014
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Format Markdown Documents in R

Have you ever used a markdown file to create an html file? Have you ever wanted to quickly format the subsequent html file to add some color or other aspects? If your answer is yes to both of those questions, this package may be of interest to you. ...

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Revisiting package dependencies

July 29, 2014
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Revisiting package dependencies

by Andrie de Vries In my previous post I wrote about how to identify and visualize package dependencies. Within hours, Duncan Murdoch (member of R-core) identified some discrepancies between my list of dependencies and the visualisation. Since then, I fixed the dispecrancies. In this blog post I attempt to clarify the issues involved in listing package dependencies. In miniCRAN...

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Fast-track publishing using the new R markdown – a tutorial and a quick look behind the scenes

July 29, 2014
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Fast-track publishing using the new R markdown – a tutorial and a quick look behind the scenes

The new R Markdown (rmarkdown-package) introduced in Rstudio 0.98.978 provides some neat features by combining the awesome knitr-package and the pandoc-system. The system allows for some neat simplifications of the fast-track-publishing (ftp) idea using so called formats. I've created a new package, the Grmd-package, with an extension to the html_document format, called the docx_document. The formatter allows an almost...

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Creating an analysis as a package and vignette

Creating an analysis as a package and vignette Following from my last post, I am going to go step by step through the process I use to generate an analysis as a package vignette. This will be an analysis of the tweets from the 2012 and 2014 ISMB conference (thanks to Neil and Stephen for...

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A Few Notes on UseR! 2014

July 25, 2014
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A Few Notes on UseR! 2014

It has been a month since the UseR! 2014 conference, and I'm probably the last one who writes about it. UseR! is my favorite conference because it is technical and not too big. I have completely lost interest in big and broad conferences like JSM (to me, it has become Joint Sightseeing Meetings). Karl has written two blog posts...

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