241 search results for "heatmap"

Interactive Q-Q Plots in R using Plotly

June 27, 2016
By

Introduction In a recent blog post, I introduced the new R package, manhattanly, which creates interactive manhattan plots using the plotly.js engine. In this post, I describe how to create interactive Q-Q plots using the manhattanly package. Q-Q plots tell us about the distributional assumptions of the observed test statistics and are common visualisation tools

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Case Study: Animation and Others Vizs

June 22, 2016
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Case Study: Animation and Others Vizs

This post will be about if we can show some data in other ways to try to tell more clearly the Oh! Foo! is this rly happening? story. Time time ago an gif appears showing the change of the global temperatures over time. Well, some sites like http://gizmodo.com/ made a reference to this animation as one-of-the-most-convincing-climate-change-visualization. Mmmm… ok! A kind of...

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How to use data analysis for machine learning, part 2

June 21, 2016
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How to use data analysis for machine learning, part 2

In part 1, we went over how to use data visualization and data analysis prior to machine learning. For example, we discussed how to visualize the data to identify potential issues in the dataset, examine the variable distributions, etc. In this blog post, we’ll continue by building a very simple model and using data visualization The post

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Manhattanly: R package for Interactive Manhattan Plots

June 13, 2016
By

Introduction The new R package, manhattanly, creates interactive manhattan plots using the plotly.js engine. The plots are usable from the R console, the RStudio viewer pane, R Markdown documents, in Shiny apps, embeddable in websites and can be exported as .png files. By hovering the mouse over a point, you can see annotation information such

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Interactive Heat Maps for R

May 23, 2016
By
2016-05-23 09_06_56-Clipboard

In every statistical analysis, the first thing one should do is try and visualise the data before any modeling. In microarray studies, a common visualisation is a heatmap of gene expression data. In this post I simulate some gene expression data and visualise it using the heatmaply package in R by Tal Galili. This package

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flexdashboard: Easy interactive dashboards for R

May 17, 2016
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flexdashboard: Easy interactive dashboards for R

Today we’re excited to announce flexdashboard, a new package that enables you to easily create flexible, attractive, interactive dashboards with R. Authoring and customization of dashboards is done using R Markdown and you can optionally include Shiny components for additional interactivity. Highlights of the flexdashboard package include: Support for a wide variety of components including interactive htmlwidgets; base, lattice, and

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BioC 3.3: NEWS of my packages

May 5, 2016
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BioC 3.3: NEWS of my packages

Today is my birthday and it happened to be the release day of Bioconductor 3.3. It’s again the time to reflect what I’ve done in the past year. ChIPseeker clusterProfiler DOSE ggtree GOSemSim ReactomePA ChIPseeker Although ChIPseeker was designed for ChIP-seq annotation, I am very glad to find that someone else use it to annotate other data including

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BioC 3.3: NEWS of my packages

May 5, 2016
By
BioC 3.3: NEWS of my packages

Today is my birthday and it happened to be the release day of Bioconductor 3.3. It’s again the time to reflect what I’ve done in the past year. ChIPseeker clusterProfiler DOSE ggtree GOSemSim ReactomePA ChIPseeker Although ChIPseeker was designed for ChIP-seq annotation, I am very glad to find that someone else use it to annotate other data including

Read more »

NEWS of my BioC packages

May 5, 2016
By
NEWS of my BioC packages

Today is my birthday and it happened to be the release day of Bioconductor 3.3. It’s again the time to reflect what I’ve done in the past year. ChIPseeker clusterProfiler DOSE ggtree GOSemSim ReactomePA ChIPseeker Although ChIPseeker was designed for ChIP-seq annotation, I am very glad to find that someone else use it to annotate other data including

Read more »

NEWS of my BioC packages

May 5, 2016
By
NEWS of my BioC packages

Today is my birthday and it happened to be the release day of Bioconductor 3.3. It’s again the time to reflect what I’ve done in the past year. ChIPseeker clusterProfiler DOSE ggtree GOSemSim ReactomePA ChIPseeker Although ChIPseeker was designed for ChIP-seq annotation, I am very glad to find that someone else use it to annotate other data including

Read more »

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