170 search results for "heatmap"

… ridiculously photogenic factors (heatmap with p-values)

May 5, 2013
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… ridiculously photogenic factors (heatmap with p-values)

Some months ago, I had to explore a vast amount of categorical variables before making some multivariate analyses. One good way to know your raw data, to make new hypotheses…etc, is to calculate some pairwise “crude” chi-square tests of independence … Sigue leyendo →

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R – Defining Your Own Color schemes for HeatMaps

March 25, 2013
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R – Defining Your Own Color schemes for HeatMaps

This post is intended at those who are beginners at R, and is inspired by a small post in Martin's bioblog.First, we plot a "correlation heatmap" using the same logic that Martin uses. In our example, let's use the Movies dataset that comes with ggplot...

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Using R: Correlation heatmap with ggplot2

March 21, 2013
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Using R: Correlation heatmap with ggplot2

Just a short post to celebrate that I learned today how incredibly easy it is to make a heatmap of correlations with ggplot2 (and reshape2, of course). So, what is going on in that short passage? cor makes a correlation matrix with all the pairwise correlations between variables (twice; plus a diagonal of ones). melt

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Calender Heatmap with Google Analytics Data

March 15, 2013
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Calender Heatmap with Google Analytics Data

As data analytics consulting firm, we think we are fortunate that we keep finding problems to find. Recently my team mate found a glaring problem of not having any connector for R with Google. With the inspiration from Michael, Ajay O, it soon become a worth problem to solve. With RGoogleAnalytics package now, we have

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Calender Heatmap with Google Analytics Data

March 15, 2013
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Calender Heatmap with Google Analytics Data

As data analytics consulting firm, we think we are fortunate that we keep finding problems to find. Recently my team mate found a glaring problem of not having any connector for R with Google. With the inspiration from Michael, Ajay O, it soon become a worth problem to solve. With RGoogleAnalytics package now, we have

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from OTU table to HEATMAP!

February 23, 2013
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from OTU table to HEATMAP!

In this tutorial you will learn: what is a heatmap how to create a clean, highly customizable heatmap using heatmap.2 in the gplots package in R how to remove samples with poor output (not very many sequences) how to rearrange your samples by a metadata category how to make a color coded bar above the heatmap

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Controlling heatmap colors with ggplot2

November 22, 2012
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Controlling heatmap colors with ggplot2

One of the most popular posts on this blog is the very first one, solving the issue of mapping certain ranges of values to particular colors in heatmaps. Given the abundance of ggplot2 usage in R plotting, I thought I’d … Continue reading →

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Simplest possible heatmap with ggplot2

September 27, 2012
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Simplest possible heatmap with ggplot2

Featuring the lovely “spectral” palette from Colorbrewer. This really just serves as a reminder of how to do four things I frequently want to do: Make a heatmap of some kind of matrix, often a square correlation matrix Reorder a factor vari...

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Heatmap tables with ggplot2, sort-of

August 27, 2012
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Heatmap tables with ggplot2, sort-of

I wrote before about heatmap tables as a better way of producing frequency or other tables, with a solution which works nicely in latex. It is possible to do them much more easily in ggplot2, like this library(Hmisc) library(ggplot2) library(reshape) data(HairEyeColor) P=t(HairEyeColor) Pm=melt(P) ggfluctuation(Pm,type="heatmap")+geom_text(aes(label=Pm$value),colour="white")+ opts(axis.text.x=theme_text(size = 15),axis.text.y=theme_text(size = 15)) Note that ggfluctuation will also take

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Heatmap tables with ggplot2

August 20, 2012
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Heatmap tables with ggplot2

I wrote before about heatmap tables as a better way of producing frequency or other tables, with a solution which works nicely in latex. It is possible to do them much more easily in ggplot2, like this library(Hmisc) library(ggplot2) library(reshape) data(HairEyeColor) P=t(HairEyeColor) Pm=melt(P) ggfluctuation(Pm,type="heatmap")+geom_text(aes(label=Pm$value),colour="white")+ opts(axis.text.x=theme_text(size = 15),axis.text.y=theme_text(size = 15)) Note that ggfluctuation will also take … Continue reading...

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