I only rarely have the occasion to need the convex hull of a set of points, but I love chull(), so I’d like to share an example of how to use it. This Gist also offers a pretty straightforward application of the Split-Apply-Combine strategy (see...

When visualizing an array of data in a heatmap, a good color map makes a world of difference.Thanks to my work in 'omics (i.e. transcriptomics - microarrays and RNASeq) I've looked at a lot of heatmaps over the past couple of years, and generated quite...

Featured I’ll be leading two courses in the near future: Value-at-Risk versus Expected Shortfall 2012 October 30-31, London. 30th: “Addressing the critical challenges and issues raised by the Basel proposal to replace VaR with Expected Shortfall” 31st: “Variability in Value-at-Risk and Expected Shortfall” led by Patrick Burns Details at CFP Events. Finance with R Workshop … Continue reading...

In general, a correlation test is used to test the association between two variables (y and z). However, if there is a third variable (x) that might be related to z or y, it makes...

BSMAP is an aligner for bisulfite sequencing reads. It outputs aligned reads as well as methylation ratios per base (via methratio.py script). The methylation ratios can be read into R via methylKit package and regular methylKit analysis can ...