How to Ask for Help using R How to Ask for Help using R The key to getting good help with an R problem is to provide a minimally working reproducible example (MWRE). Making an MWRE is really easy with R, and it will help ensure that...

Regression is a mainstay of ecological and evolutionary data analysis. For example, a disease ecologist may use body size (e.g. a weight from a scale with measurement error) to predict infection. Classical linear regression assumes no error in covariates; they are known exactly. This is rarely the case in ecology, and ignoring error in covariates can bias regression coefficient...

It’s Memorial Day and my dissertation defense is tomorrow. This week I’m phoning in my blog. I had the opportunity to teach a short course last week that was part of a larger workshop focused on ecosystem restoration. A fellow grad student and I taught a session on Excel and R for basic data analysis.

The USGS recently released a way to search for and get species occurrence records for the USA. The service is called BISON (Biodiversity Information Serving Our Nation). The service has a web interface for human interaction in a browser, and two APIs (application programming interface) to allow machines to interact with their database. One of the...

The Enron email dataset, collected during the FERC investigation of the Enron financial scandal, represents the largest publicly available set of emails. This makes theman ideal testbed for sentiment analysis algorithms. Ikanow's Andrew Strite used the open-source Infinit.e framework and a Hadoop cluster to generate sentiment scores for all of the Enron emails, and then used R to manipulate...

Next topic from Veterinary Epidemiologic Research: chapter 19, modelling survival data. We start with non-parametric analyses where we make no assumptions about either the distribution of survival times or the functional form of the relationship between a predictor and survival. There are 3 non-parametric methods to describe time-to-event data: actuarial life tables, Kaplan-Meier method, and

A package was recently released to generate plots in the style of xkcd using R. Being a big fan of the cartoon, I could not resist trying it out. So I set out to produce something like one of Hans Rosling’s bubble plots. First I needed some data. Spoilt for choice. I scraped some population data broken

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