3026 search results for "ggplot"

Dynamic occupancy models in Stan

November 14, 2014
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Dynamic occupancy models in Stan

Occupancy modeling is possible in Stan as shown here, despite the lack of support for integer parameters. In many Bayesian applications of occupancy modeling, the true occupancy states (0 or 1) are directly modeled, but this can be avoided by marginalizing out the true occupancy state. The Stan manual (pg. 96) gives an example of this kind of marginalization...

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How to Summarize a 2D Posterior Using a Highest Density Ellipse

November 13, 2014
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How to Summarize a 2D Posterior Using a Highest Density Ellipse

Making a slight digression from last month’s Probable Points and Credible Intervals here is how to summarize a 2D posterior density using a highest density ellipse. This is a straight forward extension of the highest density interval to the situation where you have a two-dimensional posterior (say, represented as a two column matrix of samples) and you want...

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Growth of open data in biology

November 10, 2014
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Growth of open data in biology

Why open data growth At rOpenSci we try to make it easier for people to use open data and contribute open data to the community. The question often arises: How much open data do we have? Another angle on this topic is: How much is open data growing? We provide access to dozens of data respositories through our various packages. We...

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Basic mapping and attribute joins in R

November 9, 2014
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Basic mapping and attribute joins in R

This post is based on the free and open source Creating-maps-in-R teaching resource for introducing R as a command-line GIS. R is well known as an language ideally suited for data processing, statistics and modelling. R has a number of spatial packages, allowing analyses that would require hundreds of lines of code in other languages to be implemented with...

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The completeness of online gun shooting victim counts

November 9, 2014
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The completeness of online gun shooting victim counts

There are a number of on line efforts to register victims of shootings online. Shootingtracker tries to register all mass shootings, those with four or more victims. Slate had the gun death tally (GDT), gun deaths starting at Newtown, running thro...

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Evaluating BreakoutDetection

November 6, 2014
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Evaluating BreakoutDetection

A couple of weeks ago, Twitter open-sourced their BreakoutDetection package for R, a package designed to determine shifts in time-series data. The Twitter announcement does a great job of explaining the main technique for detection (E-Divisive with Medians), so I won’t rehash that material here. Rather, I wanted to see how this package works relative

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Introduction to Data Science with R video workshop

November 6, 2014
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Introduction to Data Science with R video workshop

RStudio has teamed up with O’Reilly media to create a new way to learn R! The Introduction to Data Science with R video course is a comprehensive introduction to the R language. It’s ideal for non-programmers with no data science experience or for data scientists switching to R from Excel, SAS or other software. Join

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Improving R Data Visualisations Through Design

November 6, 2014
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Improving R Data Visualisations Through Design

When I start an R class, one of my opening lines is nea

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A Look at the World Values Survey

November 4, 2014
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A Look at the World Values Survey

by Peggy Fan Ph.D. Candidate at Stanford's Graduate School of Education Part of my dissertation at Stanford Graduate School of Education, International Comparative Education program, is looking at the World Values Survey (WVS), a cross-national social survey that started in 1981. Since then there has been 6 waves, and the surveys include questions that capture the demographic, behaviors, personal...

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Creating More Effective Graphs

November 4, 2014
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Creating More Effective Graphs

A few years ago I ordered a copy of the 2005 edition of Creating More Effective Graphs by Naomi Robbins. Somewhat shamefully I admit that the book got buried beneath a deluge of papers and other books and never received the attention it was due. Having recently discovered the R Graph Catalog, which implements many

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