368 search results for "PCA"

Add external code to Rmarkdown

October 21, 2014
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Ever been in a position to write a documentation or report about complex R code? Take a Shiny dashboard for example, or other big projects. Maybe you heard it already, with RMarkdown you can simply write markdown code, add some R code to it and render it to pdf, static websites or even presentations. I don’t want to...

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methylKit for bisulfite sequencing data analysis

October 21, 2014
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I have been relying upon methylKit, an R package for my RRBS data analysis. It is one the most highly cited R package for analysing bisulifite sequencing data. It is straight forward to install and it's vignette details all the major steps in the ...

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Twitter Pop-up Analytics

October 20, 2014
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Twitter Pop-up Analytics

IntroductionSo I've been thinking a lot lately. Well, that's always true. I should say, I've been thinking a lot lately about the blog. When I started this blog I was very much into the whole quantified self thing, because it was new to me, I liked the...

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Trying a prefmap

September 14, 2014
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Trying a prefmap

Preference mapping is a key technique in sensory and consumer research. It links the sensory perception on products to the liking of products and hence provides clues to the development of new, well tasting, products. Even though it is a key technique,...

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Mapping products in a space

September 7, 2014
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Mapping products in a space

I have read about people doing a Bayesian PCA at some points and always wondered how that would work. Then, at some point I thought of a way to do so. As ideas evolved my interest became not PCA as such, but rather in a prefmap. As a first step in that...

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Introducing H2O Lagrange (2.6.0.11) to R

September 1, 2014
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From my perspective the most important event that happened at useR! 2014 was that I got to meet the 0xdata team and now, long story short, here I am introducing the latest version of H2O, labeled Lagrange (2.6.0.11), to the R and greater data science communities. Before joining 0xdata, I was working at a competitor on a rival project and was repeatedly asked...

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Extracting Latent Variables from Rating Scales: Factor Analysis vs. Nonnegative Matrix Factorization

August 21, 2014
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Extracting Latent Variables from Rating Scales: Factor Analysis vs. Nonnegative Matrix Factorization

For many of us, factor analysis provides a gateway to learning how to run and interpret nonnegative matrix factorization (NMF). This post will analyze a set of ratings on a 218 item adjective checklist using both principal axis factor analysis and NMF....

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A Conversation with Max Kuhn – The useR! 2014 Interview

August 11, 2014
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The Interview In the video above, Max provides some amazing insights into the why and...

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Parameterized SQL queries

August 5, 2014
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Mateusz Żółtak asked me to spread the word about his new R package for parameterized SQL queries. Below you can find the copy of package vignette. If you work with SQL in R you may find it useful. Mateusz Żółtak The package RODBCext is an extension of the RODBC database connectivity package. It provides support

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Things to try after useR! – Part 1: Deep Learning with H2O

July 25, 2014
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Things to try after useR! – Part 1: Deep Learning with H2O

Annual R User Conference 2014The useR! 2014 conference was a mind-blowing experience. Hundreds of R enthusiasts and the beautiful UCLA campus, I am really glad that I had the chance to attend! The only problem is that, after a few days of non-stop R talks, I was (and still am) completely overwhelmed...

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