1210 search results for "maps"

Analyzing Microbial Growth with R

April 9, 2014
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Analyzing Microbial Growth with R

In experimental evolution research, few things are more important than growth. Both the rate of growth and the resulting yield can provide direct insights into a strain or species’ fitness. Whether one strain with a trait of interest can outgrow (and outcompete) another that possesses a variation of that trait …

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Analyzing Microbial Growth with R

April 9, 2014
By
Analyzing Microbial Growth with R

In experimental evolution research, few things are more important than growth. Both the rate of growth and the resulting yield can provide direct insights into a strain or species’ fitness. Whether one strain with a trait of interest can outgrow (and outcompete) another that possesses a variation of that trait often depends primarily on the fitnesses of the two...

Read more »

Analyzing Microbial Growth with R

April 9, 2014
By
Analyzing Microbial Growth with R

In experimental evolution research, few things are more important than growth. Both the rate of growth and the resulting yield can provide direct insights into a strain or species’ fitness. Whether one strain with a trait of interest can outgrow (and outcompete) another that possesses a variation of that trait often depends primarily on the fitnesses of the two...

Read more »

Animated Choropleths in R

April 9, 2014
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Animated Choropleths in R

Ari Lamstein has updated his choroplethr package with a new capability for creating animated data maps. I can't embed the animated version here, but click the image below to see an animation of US counties by average household income, from the richest to the poorest by percentile. (The code behind the animation is available on github.) The chloroplethr package...

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categoryCompare Paper Finally Out!

categoryCompare Paper Finally Out! I can finally say that the publication on my Bioconductor package categoryCompare is finally published in the Bioinformatics and Computational Biology section of Frontiers in Genetics. This has been a long time coming, and I wanted to give some background on the inspiration and development of the method and software. TL;DR The software package has been...

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Use pipeline operators in R

April 7, 2014
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In data-driven statistical computing and data analysis, applying a chain of commands step by step is a common situation. However, it is neither straightforward nor flexible to write a group of deeply nested functions. It is because the function that comes later must be written first. Consider the following example in which we need to take the following steps: Generate...

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Use pipeline operators in R

April 7, 2014
By

In data-driven statistical computing and data analysis, applying a chain of commands step by step is a common situation. However, it is neither straightforward nor flexible to write a group of deeply nested functions. It is because the function that comes later must be written first. Consider the following example in which we need to take the following steps: Generate...

Read more »

Earthquake Magnitude / Depth Chart

April 7, 2014
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Earthquake Magnitude / Depth Chart

I am working on a project related to secondary effects of earthquakes. To guide me in the analysis I need a chart showing the location, magnitude and depth of recent earthquakes. There are a host of such charts available already, but since I had the required data on hand, it seemed like a good idea

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Mapping academic collaborations in Evolutionary Biology

Mapping academic collaborations in Evolutionary Biology

Mapping academic collaborations in Evolutionary Biology This post is a repubication of a visualisation I did in 2011 for my (now defunct) datajujitsu.co.uk blog. It was a naive first attempt at web-scraping from an academic publishers website. It was done before I was aware of the problems surrounding access to, and text-mining of, online academic content hosted by...

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Mapping the March 2014 California Earthquake with ggmap

April 1, 2014
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Mapping the March 2014 California Earthquake with ggmap

I had no intention to blog this, but @jayjacobs convinced me otherwise. I was curious about the recent (end of March, 2014) California earthquake “storm” and did a quick plot for “fun” and personal use using ggmap/ggplot. I used data from the Southern California Earthquake Center (that I cleaned up a bit and that you

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