800 search results for "MAPS"

ChIP-seq Analysis with Bioconductor

October 22, 2012
By
ChIP-seq Analysis with Bioconductor

Often scientists are interested in finding genome-wide binding site of their protein of interest. R offers easy way to load and process the sequence files coming from ChIP-seq experiment. During the next weeks I’m going to present a pipeline that … Continue reading →

Read more »

Agreement between code readability ratings given by students

October 13, 2012
By
Agreement between code readability ratings given by students

I have previously written about how we know nothing about code readability and questioned how the information content of expressions might be calculated. Buse and Weimer ran a very interesting experiment that asked subjects to rate short code snippets for readability (somebody please rerun this experiment using professional software developers). I’m interested in measuring how

Read more »

Nine lightning talks on R

October 12, 2012
By

At Tuesday's Bay Area R User Group meetup, nine speakers gave five-minute talks on various aspects of R. Revolution Analytics' Luba Gloukhov was one of the presenters, and also provides the summary of the talks below. Links to the slides are included where available for you to check out. Ariel Faigon: Chrestomathy with R Ariel walked us through his...

Read more »

Pilot Study: Small Town Land Surface Temperature

October 11, 2012
By
Pilot Study: Small Town Land Surface Temperature

Introduction Zhang and Imhoff (2010)  pdf here utilized NLCD impervious surface area (ISA), Olson biomes, and MODIS Land Surface temperature (LST) to estimate the magnitude of UHI in large cities across the US.  Peng  employed a   similar approach in studying 419 large cities ( population greater than 1m ) around world. Peng’s work suggests a limit

Read more »

Making Color Ramps in Matlab

October 9, 2012
By

When visualizing an array of data in a heatmap, a good color map makes a world of difference.Thanks to my work in 'omics (i.e. transcriptomics - microarrays and RNASeq) I've looked at a lot of heatmaps over the past couple of years, and generated quite...

Read more »

What’s in My Pocket? Read it now! (or Read It Later)

October 9, 2012
By
What’s in My Pocket? Read it now! (or Read It Later)

IntroductionYou know what's awesome? Pocket.I mean, sure, it's not the first. I think Instapaper existed a little before (perhaps). And there are alternatives, like Google Reader. But Pocket is still my favorite. It's pretty awesome at what it does.Pocket (or Read It Later, as it used to be known) has fundamentally changed the...

Read more »

In case you missed it: September 2012 Roundup

October 8, 2012
By

In case you missed them, here are some articles from September of particular interest to R users. You can now browse the R-devel sources and changelogs at GitHub. R is used to create a 3-D animation of the Antarctic ice cap. At the DataWeek SF conference, R users from eBay, Intuit, Minted and other companies describe how R is...

Read more »

DIY ZeroAccess GeoIP Analysis : So What?

October 8, 2012
By
DIY ZeroAccess GeoIP Analysis : So What?

NOTE: A great deal of this post comes from @jayjacobs as he took a conversation we were having about thoughts on ways to look at the data and just ran like the Flash with it. Did you know that – if you’re a US citizen – you have approximately a 1 in 5 chance of getting the

Read more »

DIY ZeroAccess GeoIP Plots

October 5, 2012
By
DIY ZeroAccess GeoIP Plots

Since F-Secure was #spiffy enough to provide us with GeoIP data for mapping the scope of the ZeroAccess botnet, I thought that some aspiring infosec data scientists might want to see how to use something besides Google Maps & Google Earth to view the data. If you look at the CSV file, it’s formatted as

Read more »

City Size and SUHI

October 2, 2012
By
City Size and SUHI

In the course of putting together data for my kriging project with the CRN stations, I got another idea related to a small but potentially important corner of the concerns over UHI in the global temperature index. For clarity I suppose I should make it clear that my position is that the UHI bias is

Read more »