454 search results for "knitr"

Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays

July 13, 2012
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Analysing time course microarray data using Bioconductor: a case study using yeast2 Affymetrix arrays

A few years ago I was involved in analysing some time-course microarray data. Our biological collaborators were interested in how we analysed their data, so this lead to a creation of tutorial, which in turn lead to a paper. When we submitted the paper, one the referees “suggested” that we write the paper using Sweave;

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Validating email adresses in R

July 5, 2012
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I currently program an automated report generation in R – participants fill out a questionnaire, and they receive a nicely formatted pdf with their personality profile. I use knitr, LaTex, and the sendmailR package. Some participants did not provide valid email addresses, which caused the sendmail function to crash. Therefore I wanted some validation of

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Rchievement of the day #3: Bloggin’ from R

July 1, 2012
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Rchievement of the day #3: Bloggin’ from R

I have become a complete knitr addict of late and have been using it in combination with RStudio’s R markdown support on a regular basis. In fact I wrote this post using it! It then dawned on me how great it would be if I … Continue reading →

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Blog with R Markdown and tumblr: Part II

June 26, 2012
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Blog with R Markdown and tumblr: Part II

In Part I of this series I described how to set up your tumblr blog so that you can create posts like those on the example site R Markdown Blog. Now I’ll describe how you can actually create such posts. I’ll be using the RStudio IDE for the desktop in all the steps below,...

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Making Reproducible Research Enjoyable

June 25, 2012
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Making Reproducible Research Enjoyable

Note: this is a contributed article for the ICSA Bulletin and the basic idea can be summarized in this picture. It is hard to convince people to think about reproducible research (RR). There are two parts of difficulties: (1) tools used to be for ex...

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useR 2012: main conference braindump

June 24, 2012
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useR 2012: main conference braindump

I knew R was versatile, but DANG, people do a lot with it: > > … I don’t think anyone actually believes that R is designed to make *everyone* happy. For me, R does about 99% of the things I … Continue reading →

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Highlights of the useR! 2012 – Review of the reviews

June 24, 2012
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Highlights of the useR! 2012 – Review of the reviews

It’s gutted that I could not attend useR! 2012 after having a great time at useR!2011 at Warwick. However, a great active online community of useRs allows me to get lots of goods stuffs from the conference even though I did not attend physically. By keep following the #useR2012 and #rstats in Twitter and reading some great posts from R-bloggerRs on the

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Using twitteR to see, what german press secretary tweets about

June 24, 2012
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Using twitteR to see, what german press secretary tweets about

Find the HTML-slides here, and the .Rmd-file that was used to generate here. How to deal with .Rmd-files, see here What this is about These are my first steps to play around with the interface from R to twitter, using the twitteR-package. We will load the latest 1500 (maximum the API allows) tweets from the

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eoda publishes interactiveGGPLOT – interactive graphics with ggplot2

June 22, 2012
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One of Rs great strengths compared to other statistic solutions or programming languages ​​is the amount of possibilities for creating well-designed publication-quality plots. Almost all plot types can be created with any amount of fine tuning. R works on small data sets as well as on big data. In addition to Rs base-graphics various add-on

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