429 search results for "knitr"

Upcoming R training by Hadley Wickham: SF Dec 3-4, DC Dec 10-11

November 1, 2012
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(By Hadley Wickham) Hi all, I’d like to let you know about four R training courses that RStudio will be offering in December: * Effective data visualization (http://bit.ly/TY2ONI) Dec 3. San Francisco, CA * Reports and reproducible research (http://bit.ly/RsZmYr) Dec 4. San Francisco, CA * Advanced R programming (http://bit.ly/RvZDsd) Dec 10. Washington, DC * Package development (http://bit.ly/UhTIWz) Dec 11....

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Hierarchical linear models and lmer

October 31, 2012
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Hierarchical linear models and lmer

Hierarchical linear models and lmer Article by Ben Ogorek Graphics by Bob Forrest Background My last article featured linear models with random slopes. For estimation and prediction, we used the lmer function from the lme4 package. Today we'll consider another level in the hierarchy, one...

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visit to ISU

October 30, 2012
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visit to ISU

  A short visit to ISU but and therefore a busy and proftable day! About ten appointments in Snedecor Hall after a nice morning run, a highly attended Zyskind Lecture, and many interesting discussions all over the day: e.g., I had a great time discussing using null recurrent Markov chains for integral approximations with Krishna

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Can We Live Without Backslashes?

October 30, 2012
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Can We Live Without Backslashes?

Two months ago there was a discussion in the ESS mailing list about Emacs/ESS started by Paul Johnson, who claimed "Emacs Has No Learning Curve". While this sounds impossible, he really has some good points, e.g. he encourages beginners to look at the ...

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Build Static HTML Help Pages for R Packages

October 29, 2012
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Build Static HTML Help Pages for R Packages

Many R users may still remember the good old days when we had static HTML documentation for R packages. That was probably before R 2.10.0 (in 2009). Then we had the fancy dynamic HTML help based on the built-in httpd server, but it has never really mad...

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Visiting FHCRC, JHSPH and Meeting Xi’an

October 29, 2012
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Visiting FHCRC, JHSPH and Meeting Xi’an

I have been traveling during the last two weeks. I visited Fred Hutchinson Cancer Research Center on Oct 16 and the Department of Biostatistics at Johns Hopkins at the invitation of Simply Statistics on Oct 23. Today Christian Robert was visiting our department at Iowa State, and I also talked to him. It is really cool...

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Chris Hamm on using plot.new() for better combined plots

October 26, 2012
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Chris Hamm on using plot.new() for better combined plots

At DRUG today, Chris Hamm (email (cahamm at ucdavis dot edu)) showed us an easier way to combine multiple figures into one plot using plot.new, rather than par(mfrow=...) Here’s his script: A Report Generated by knitr # plot.new() [email protected] #I discovered this plotting method when trying to add an inset figure # to a plot # plot.new is part of the traditional graphics....

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9 reasons to use RStudio

October 16, 2012
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9 reasons to use RStudio

In no particular order, here are nine reasons why I really like the RStudio IDE for the R statistical programming language. 1) R benefits from an IDE – I accept that in some languages an IDE is unnecessary—Perl is the first example … Continue reading →

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Getting taxonomic names downstream

October 16, 2012
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It can be a pain in the ass to get taxonomic names. For example, I sometimes need to get all the Class names for a set of species. This is a relatively easy problem using the ITIS API (example below). The much harder problem is getting all the taxono...

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Color Palettes in HCL Space

October 12, 2012
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Color Palettes in HCL Space

This is a quick follow-up to my previous post about Color Palettes in RGB Space. Achim Zeileis had commented that, perhaps, it would be more informative to evaluate the color palettes in HCL (polar LUV) space, as that spectrum more accurately describes how humans perceive color. Perhaps more clear trends would emerge in HCL space,

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