1653 search results for "Ggplot2"

Annotated Manhattan plots and QQ plots for GWAS using R, Revisited

April 25, 2011
By
Annotated Manhattan plots and QQ plots for GWAS using R, Revisited

Last year I showed you how to create manhattan plots, and later how to highlight regions of interest, using ggplot2 in R. The code was slow, required a lot of memory, and was difficult to maintain and modify.I finally found time to rewrite the code usi...

Read more »

Let’s try this again: Introducing Rook for #rstats!

April 25, 2011
By

Well I totally botched my launch last week. Thankfully, my wife straightened me out: I decided to change the name of Rack to Rook so there won’t be any future confusion. And instead of rewriting all my posts last week, just read them again and every...

Read more »

intuitive visualizations of categorization for non-technical audiences

April 25, 2011
By
intuitive visualizations of categorization for non-technical audiences

For a project I’m working on at work, I’m building a predictive model that categorizes something (I can’t tell you what) into two bins. There is a default bin that 95% of the things belong to and a bin that the business cares a lot about, containing 5% of the things. Some readers may be

Read more »

How to load your iPhone location data into R

April 22, 2011
By
How to load your iPhone location data into R

Earlier this week, data scientists Pete Warden and Alasdair Allen reported that iPhones and cell-enabled iPads keep an internal log of the devices location, which is accessible from the backup that iTunes creates when you sync the device. (Update Apr 27: Apple responds that the locations are those of nearby cell towers and wi-fi hotspots, not the device itself.)...

Read more »

RStudio, Revolution Analytics and Deducer: A Tale of Three GUIs

April 19, 2011
By

I’m in the process of moving from SPSS to R at the moment. It’s not been the easiest of rides, but then learning how to do a core part of your job never really should be. It’s been fun, though – don’t get me wrong – it’s definitely been an adventure!! Here I’m going to

Read more »

Phylometa from R: Randomization via Tip Shuffle

April 16, 2011
By
Phylometa from R: Randomization via Tip Shuffle

I wrote earlier about some code I wrote for running Phylometa (software to do phylogenetic meta-analysis) from R.I have been concerned about what exactly is the right penalty for including phylogeny in a meta-analysis. E.g.: AIC is calculated from Q in...

Read more »

Historical Sources of Bond Returns

April 11, 2011
By
Historical Sources of Bond Returns

As promised in Monitoring Sources of Bond Return, we can show more history if we use CPI instead of expected inflation (from the TIP inflation breakeven yield).  Here are the results with history back to 1953. From TimelyPortfolio However, mo...

Read more »

Monitoring Sources of Bond Return

April 8, 2011
By
Monitoring Sources of Bond Return

Here is a way to monitor bond return sources in R.  In the next iteration, I will use CPI to add history to the series. From TimelyPortfolio So right now, you can expect about a 5% return from bonds.  How much of that is real return is u...

Read more »

Getting started with the Heritage Health Price competition

April 8, 2011
By
Getting started with the Heritage Health Price competition

The US$ 3 million Heritage Health Price competition is on so we take a look at how to get started using the R statistical computing and analysis platform.

Read more »

Getting started with the Heritage Health Price competition

April 8, 2011
By
Getting started with the Heritage Health Price competition

The US$ 3 million Heritage Health Price competition is on so we take a look at how to get started using the R statistical computing and analysis platform.

Read more »