1653 search results for "Ggplot2"

HPC for biological research

August 28, 2011
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In early May I had the opportunity to attend a workshop on using high performance computing in R hosted at Nimbios. I’ve been meaning to write a summary of the meeting ever since but got sidetracked by various other projects. Since a collaborator recently asked for meeting notes I finally took the time to write

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A first go at ‘manipulate’ in RStudio

August 26, 2011
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A first go at ‘manipulate’ in RStudio

Something I’m missing from R (especially coming from Mathematica) is the ability to quickly build interactive graphs, which I find very useful for getting a good intuition of the impact of parameters on a mathematical function. Richie Cotton’s post about … Continue reading →

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Quick labels within figures

August 26, 2011
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Quick labels within figures

One of the coolest R packages I heard about at the useR! Conference: Toby Dylan Hocking‘s directlabels package for putting labels directly next to the relevant curves or point clouds in a figure. I think I first learned about this idea from Andrew Gelman: that a separate legend requires a lot of back-and-forth glances, so

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"My interpretation of [Leland Wilkinson’s] grammar [of statistical graphics]: —Data is the most…"

August 25, 2011
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"My interpretation of [Leland Wilkinson’s] grammar [of statistical graphics]:
—Data is the most…"

“My interpretation of grammar : —Data is the most important thing, and the thing that you bring to the table. —Geometric objects … what you actually see on the plot: points, lines, polygons, etc. ...

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Comparison of ave, ddply and data.table

August 25, 2011
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Comparison of ave, ddply and data.table

A guest post by Paul Hiemstra. ———— Fortran and C programmers often say that interpreted languages like R are nice and all, but lack in terms of speed. How fast something works in R greatly depends on how it is implemented, i.e. which packages/functions does one use. A prime example, which shows up regularly on

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Things I learned at useR!2011

August 25, 2011
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Things I learned at useR!2011

The title says “things” but conferences are mainly about people. Some of it can be serendipitous.  For example, one day I sat next to Jonathan Rougier at lunch because I had a question for him about climate models.  When Jonathan left, I started a conversation with the person on my other side.  That was most … Continue reading...

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Popular topics at the BioStar Q&A site

August 23, 2011
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Popular topics at the BioStar Q&A site

Which topics are the most popular at the BioStar bioinformatics Q&A site? One source of data is the tags used for questions. Tags are somewhat arbitrary of course, but fortunately BioStar has quite an active community, so “bad” tags are usually edited to improve them. Hint: if your question is “How to find SNPs”, then

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More useless statistics

August 22, 2011
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More useless statistics

Over at the ExploringDataBlog, Ron Pearson just wrote a post about the cases when means are useless. In fact, it’s possible to calculate a whole load of stats on your data and still not really understand it. The canonical dataset for demonstrating this (spoiler alert: if you are doing an intro to stats course, you

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useR! Conference 2011 highlights

August 20, 2011
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useR! Conference 2011 highlights

I was at the useR! Conference at The University of Warwick in Coventry, UK, last week. My goal in going was to learn the latest things regarding (simple) dynamic graphics, (simple) web-based apps, parallel computing, and memory management (dealing with big data sets). I got just what I was hoping for and more. There are

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Do older SOers use fewer words?

August 18, 2011
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Do older SOers use fewer words?

On StackOverflow, to posters with more experience ask their questions in fewer words? No. There's no visible difference: Chars of non-code: Chars of code: The data comes from the super-handy StackOverflow API, which was retrieved using wget and then parsed using rjson and XML. First read in and parse the JSON:so.R1...

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