(This article was first published on Gregor Gorjanc (gg), and kindly contributed to R-bloggers)
Jay Kerns wrote a book titled "Introduction to Probability and Statistics Using R" or IPSUR for short. He has put up a web site for the book and Rcmdr plugin. There are at least two very important points from my side (I did not read the book, yet): 1. it is free to download (thank you Jay!!!) and 2. it was written with the help of LyX-Sweave. This shows that combination of LyX and Sweave is really powerful.
To leave a comment for the author, please follow the link and comment on his blog: Gregor Gorjanc (gg).
R-bloggers.com offers daily e-mail updates about R news and tutorials on topics such as: visualization (ggplot2, Boxplots, maps, animation), programming (RStudio, Sweave, LaTeX, SQL, Eclipse, git, hadoop, Web Scraping) statistics (regression, PCA, time series, trading) and more...

Zero Inflated Models and Generalized Linear Mixed Models with R.
Zuur, Saveliev, Ieno (2012).