Blog Archives

Creating awesome reports for multiple audiences using knitrBootstrap

December 10, 2013
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Creating awesome reports for multiple audiences using knitrBootstrap

As a biostatistics student, I use R very frequently when analyzing data. At the same time, I interact with other researchers, some who know how to use R (R crowd) and some who don't (yet!): no-R crowd. This means that I have to be able to communicate my results to two crowds. It is important that I can quickly...

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Trying to reduce the memory overhead when using mclapply

November 14, 2013
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Trying to reduce the memory overhead when using mclapply

I am currently trying to understand how to reduce the memory used by mclapply. This function is rather complicated and others have explained the differences versus parLapply (A_Skelton73, 2013; Read more »

Creating your Jekyll-Bootstrap powered blog for R blogging

November 9, 2013
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Creating your Jekyll-Bootstrap powered blog for R blogging

As you might have noticed, I recently decided to move Fellgernon Bit from Tumblr to GitHub. There are a couple of reasons why I made this change. I wanted a more professional-looking blog. There are not many R blogs on Tumblr, and well, long text posts are not really meant for Tumblr. Better code highlighting. I had enabled R code highlighting...

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ggplot Tutorial

June 21, 2013
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ggplot Tutorial

ggplot Tutorial I liked the following ggplot2 tutorial which is featured in Gabriela de Queiroz’s blog called unbiasedestimator. The tutorial looks very neatly presented and I’m sure that it will be very helpful to anyone just getting started with ggplot2 before they jump into ggplot2: Elegant Graphics for Data Analysis by Hadley Wickham or R Graphics Cookbook by...

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userR2013 data analysis contest: data exploration

June 12, 2013
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userR2013 data analysis contest: data exploration

Description The useR2013 conference is organizing a data analysis contest, check the rules here. They have a package called useR2013DAC with two data sets: one from La Liga and the other one from the Formula 1. Once you download and install the package (available here), you can quickly explore the data using the following R commands: Data exploration ## Load the...

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Reading an R file from GitHub

Reading an R file from GitHub

Lets say that I want to read in this R file from GitHub into R. The first thing you have to do is locate the raw file. You can do so by clicking on the Raw button in GitHub. In this case it’s https://raw.github.com/lcolladotor/ballgownR-devel/master/ballgownR/R/infoGene.R One would think that using source() would work, but it doesn’t as shown below: source("https://raw.github.com/lcolladotor/ballgownR-devel/master/ballgownR/R/infoGene.R") ##...

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Using plyr and doMC for quick and easy apply-family functions

April 26, 2013
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Using plyr and doMC for quick and easy apply-family functions

A few weeks back I dedicated a short amount of time to actually read what plyr (Wickham, 2011) is about and I was surprised. The whole idea behind plyr is very simple: expand the apply() family to do things easy. plyr has...

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Predicting who will win a NFL match at half time

March 23, 2013
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Predicting who will win a NFL match at half time

It was great to have a little break, Spring break, although the weather didn’t feel like spring at all! During the early part of the break I worked on my final project for Jeff Leek’s data analysis class, which we call 140.753 here. Continuing my previous posts on the topic, this time I’ll share the results of my...

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And so begins English Composition I

March 21, 2013
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And so begins English Composition I

This week started the English Composition I: Achieving Expertise course (Comer, 2013) that I have been looking forward to. I am not sure yet how long I will last, but I hope to enjoy it as much as I can. Plus, it should help me with my...

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FBit: GitHub repo for posts with R code for this blog

March 11, 2013
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FBit: GitHub repo for posts with R code for this blog

This is a test post since I want to improve upon Jeffrey Horner’s strategy for posting R code in Tumblr. The only minor improvement I wanted to try out is hosting the images directly on the web. I mean, right now the images won’t show in RSS readers. I’m not doing anything new at all, just using the...

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