A Friday round-up

December 1, 2011
By

(This article was first published on What You're Doing Is Rather Desperate » R, and kindly contributed to R-bloggers)

Just a brief selection of items that caught my eye this week. Note that this is a Friday as opposed to Friday, lest you mistake this for a new, regular feature.

1. R/statistics

  • ggbio
  • A new Bioconductor package which builds on the excellent ggplot graphics library, for the visualization of biological data.

  • R development master class
  • Hadley Wickham recently presented this course on R package development for my organisation. I was on parental leave at the time, otherwise I would have attended for sure.

2. Bioinformatics in the media
DNA Sequencing Caught in Deluge of Data

I described this NYT article as a “surprisingly-good intro article“. Michael Eisen described it as “kind of silly“.

I think we’re both right. Michael’s perspective is that of an expert in high-throughput sequencing data; I’m just pleased to see an introduction to bioinformatics for non-specialists in a mainstream newspaper. And I note that they have corrected the figure caption which offended Michael.

As to the “deluge”: yes, there are other sciences that generate more data and yes, we probably don’t need to archive/analyse a lot of the raw data. However, I’d contend that the basic premise of the article is correct: we are sequencing faster than we can analyse. The solution, obviously, is more bioinformaticians.


Filed under: bioinformatics, R, research diary, statistics, web resources

To leave a comment for the author, please follow the link and comment on his blog: What You're Doing Is Rather Desperate » R.

R-bloggers.com offers daily e-mail updates about R news and tutorials on topics such as: visualization (ggplot2, Boxplots, maps, animation), programming (RStudio, Sweave, LaTeX, SQL, Eclipse, git, hadoop, Web Scraping) statistics (regression, PCA, time series, trading) and more...



If you got this far, why not subscribe for updates from the site? Choose your flavor: e-mail, twitter, RSS, or facebook...

Comments are closed.