Monthly Archives: July 2011

Censoring on one end, “outliers” on the other, what can we do with the middle?

July 8, 2011
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This post was written by Phil. A medical company is testing a cancer drug. They get a 16 genetically identical (or nearly identical) rats that all have the same kind of tumor, give 8 of them the drug and leave 8 untreated…or maybe they give them a placebo, I don’t know; is there a placebo

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installing R 2.13.1 on Amazon EC2′s “Amazon Linux” AMI #rstats

July 8, 2011
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installing R 2.13.1 on Amazon EC2′s “Amazon Linux” AMI #rstats

Condensed from this post (and comments) on David Chudzicki’s blog, tweaked, and updated for R-2.13.1. Assumes you’re starting with a virgin “Amazon Linux” AMI. I picked “Basic 64-bit Amazon Linux AMI 2011.02.1 Beta” (AMI Id: ami-8e1fece7) because it was marked as free tier eligible on the “Quick Start” tab of AWS’s “Launch Instance” dialog box:

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The virtues of incoherence?

July 8, 2011
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Kent Osband writes:

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R 2.13.1 released

July 8, 2011
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As announced by the R core team, R 2.13.1 has been released on schedule today. For those who build R themselves, updated source code is available now; pre-built binaries will propagate through the CRAN network over the next couple of days. This update includes some minor bug fixes to graphics, fixes to some edge cases in the class systems,...

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The R Programming Wikibook

July 8, 2011
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The R Programming Wikibook

The R Programming wikibook is an open source community project that "aims to create a cross-disciplinary practical guide to the R programming language." It was launched in June 2011 and is seeking content and contributors. The full call for the R Progr...

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Analyzing the Failed States Index (with Polity IV)

July 7, 2011
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Analyzing the Failed States Index (with Polity IV)

So, I decided to sit down and have a little fun with that Failed States Index data I put together. To start, I expect that the dataset will be pretty linearly correlated with the polity IV data. This makes sense–true democracies aren’t failed states, and failed states tend not to be democratic. To test this,

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Scary Derivatives and Scary XML in R

July 7, 2011
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Scary Derivatives and Scary XML in R

I need some new R skills, and there is no better motivation to learn XML in R than one of the scariest financial datasets out there—the US Department of the Treasury Office of the Comptroller of the Currency (OCC) Quarterly Derivatives Report. I’ll...

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High-quality R graphics on the Web with SVG

July 7, 2011
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High-quality R graphics on the Web with SVG

If you want the graphics you create with R to look their best, in general it's best to go for a vector-based graphics format instead of a raster-based format. Common formats like GIF and JPG are raster-based: the image is composed of pixels, and if you don't choose a high enough resolution, you're likely to lose fine details and/or...

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GLMM Hell

July 7, 2011
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GLMM Hell

I have been starting to analyze some data I have of repeated counts of salamanders from 5 plots over 4 years. I am trying to develop a predictive model of salamander nighttime surface activity as a function of weather variables. The repeated counting l...

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A simple ggplot2 scatterplot revisited

July 7, 2011
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Rick Wicklin contacted me with a helpful suggestion for improving the data presentation method outlined in my  previous post on using ggplot2 to visualize some data. In the previous post I had plotted up a highly correlated set of points, showing the correspondence between maximum daily body temperatures of model snails sitting with the foot

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