Gillespie algorithm

GillespieSSA on CRAN

September 21, 2007 | Mario Pineda-Krch

So it’s official – my R package GillespieSSA has been posted to the official list of packages on CRAN (The Comprehensive R Archive Network). Check it out. Now back to my manuscript. Over the last few days I have been … Continue reading → [Read more...]

GillespieSSA 0.2-0 is released

September 19, 2007 | Mario Pineda-Krch

Just finished the new version of the GillespieSSA package. The tar ball of the new version is posted on its web page (here). I also submitted it to CRAN so in (due time) it should appear on the official R … Continue reading → [Read more...]

119 days of number crunching…

August 23, 2007 | Mario Pineda-Krch

Just checked on the 70000+ simulations I submitted to the Cow last night. The purpose of these runs is to explore a given system (the logistic growth model in this case) using different implementations of the stochastic simulation algorithm (aka … Continue reading → [Read more...]

GillespieSSA poster

August 3, 2007 | Mario Pineda-Krch

Finished my poster for the useR! 2007 meeting. It is also posted on the GillespieSSA web page as part of the package documentation. Now, all I have to do is show it off in Ames next week…, oh, and I … Continue reading →
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Adaptive tau-leaping in SSA

July 26, 2007 | Mario Pineda-Krch

Just a brief update on my activities 11 days before the R package GillespieSSA is to be released. I have been hacking away on the code, debugging, and running test simulations like there is no tomorrow. The last SSA implementation … Continue reading → [Read more...]

Abstract for useR! 2007 poster

July 15, 2007 | Mario Pineda-Krch

Here’s my submitted abstract for the poster I will be presenting at the useR! 2007 meeting in August. GillespieSSA: A stochastic simulation package for R Mario Pineda-Krch Center for Animal Disease Modeling and Surveillance University of California, Davis Abstract Stochastic … Continue reading → [Read more...]

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