R plotmath functions combined with variable values

May 4, 2017

(This article was first published on R-project – lukemiller.org, and kindly contributed to R-bloggers)

Getting certain special symbols into R plots, combined with values that are currently stored in variables, has been an ongoing headache of mine. In particular, plotmath symbols such as the plus-minus sign (±), for which the plotmath command is %+-%, had always caused problems due to my inability to parse the R help documentation. For an example, I was trying to get the following simple value (a mean ± 1 SE for a temperature difference) inserted into a plot (a minimalist example):

It turns out that the plotmath operators that are surrounded by percent signs need to be surrounded by empty quote marks to get them to appear correctly inside a bquote() call. To make the plot above, I used the following commands:

# Define some variables
mymean = 1.2345678
mySE = 0.55555
# Make the empty plot
plot(x = 0, y = 0, type = 'n')
# Assemble a label, using bquote()
mylabel = bquote(Delta*italic(T)[max]~.(format(mymean,digits=3))*''%+-%''*
# Add mylabel to the plot at x=0, y=0
text(x = 0, y = 0, labels = mylabel, font = 2, cex = 2)

The bquote() is where the action happens. Inside bquote(), I have the following arguments:

  • Delta gets interpreted as a keyword, and turned in to the greek symbol.
  • The asterisk makes sure Delta is directly next to whatever follows the asterisk (instead of the ~ tilde symbol, which inserts a blank space).
  • italic(T) makes the capital letter T appear in italics.
  • [max] makes whatever is inside the brackets into a subscript. A superscript would be set using the ^ symbol.
  • The tilde puts a space after the subscript
  • .(format(mymean,dig=3)) evaluates the variable inside .() and returns the value. In this case, I have inserted a call to format() to make sure the value of mymean is displayed with a sensible number of significant digits.
  • The asterisk leads into the ''%+-%'' chunk. The empty quotes around %+-% allow it to work here and be converted into the ± symbol.
  • The next asterisk leads into .(format(mySE,digits=2)), which is another call to .() used to retrieve and print the numeric value stored in mySE, with the appropriate number of digits.
  • The next asterisk leads into degree, which is another keyword, and R will convert it into the degree symbol °.
  • Finally, the next asterisk leads to C, which just gets interpreted as the letter C, since it is not a keyword. I could have written a whole word here if desired (Celsius), or even multiple words separated by ~ tildes.

Once mylabel is assembled, I stick it in the plot at a location defined in the text() function.

The complete list of keywords and operator symbols available for use in this way can be found by typing ?plotmath at the R console and perusing the help file.

To leave a comment for the author, please follow the link and comment on their blog: R-project – lukemiller.org.

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