Articles by rOpenSci - open tools for open science

UCSCXenaTools: Retrieve Gene Expression and Clinical Information from UCSC Xena for Survival Analysis

September 5, 2019 | rOpenSci - open tools for open science

The UCSC Xena platform provides an unprecedented resource for public omics data from big projects like The Cancer Genome Atlas (TCGA), however, it is hard for users to incorporate multiple datasets or data types, integrate the selected data with popular analysis tools or homebrewed code, and reproduce analysis procedures. To ...
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Synthesizing population time-series data from the USA Long Term Ecological Research Network

August 12, 2019 | rOpenSci - open tools for open science

Introduction The availability of large quantities of freely available data is revolutionizing the world of ecological research. Open data maximizes the opportunities to perform comparative analyses and meta-analyses. Such synthesis efforts will increasingly exploit “population data”, which we define here as time series of population abundance. Such population data plays ... [Read more...]
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