Recently I have been starting to use dplyr for handling my data in R. It makes everything a lot smoother! My previous workflow – running an SQL query, storing the results as CSV, loading it in RStudio – is now history. With dplyr you can directly query data from many different databases in a very convenient way. Unfortunately Microsoft SQL Server is not directly supported but by using the package RSQLServer it can be done like with any other database. In this blog post I’ll explain how I installed everything on my Windows 7 machine to access MSSQL Server with R, since it was not as straight forward as one might think.
All you need … theoretically
The package RSQLServer is not available on CRAN anymore but it can be installed from the github repo imanuelcostigan/RSQLServer.
If this works you’re lucky and already have all the necessary things installed. If not, follow the steps below
Errors I encountered
On my path from finding out about RSQLServer to actually using it I had to fix a few things. Searching on the internet and finding most of the answers on stackoverflow I was able to piece together everything I needed. To save everyone else who tries this some time I collected everything I found out.
Fixing the installation
The first error occured when I tried to install the package as shown above.
Downloading GitHub repo imanuelcostigan/[email protected]
from URL https://api.github.com/repos/imanuelcostigan/RSQLServer/zipball/master
Downloading GitHub repo hadley/[email protected]
from URL https://api.github.com/repos/hadley/dplyr/zipball/63d4a9f5
Error: running command ‘”C:/PROGRA~1/R/R-33~1.2/bin/x64/R” –no-site-file –no-environ –no-save –no-restore –quiet CMD config CC’ had status 1
To resolve this:
- Find out which R version you have, if you don’t know, type
R.versioninside an R session
- Download and install the correct version of Rtools
- Although I had R version 3.3 and downloaded the correct R version for it, it tried to install it in a directory called “34”. To make sure it will later find it, I changed this to “33” to match my R version. I am not sure whether it made a difference.
- Make sure to check the option where it asks if you want to add it to the path. This makes a difference.
- Make sure you have the correct Java version and/or architecture installed. I didn’t have Java installed for x86 which also caused the installation to fail.
- Restart your computer or at least log out and in again.
After that I was able to install the package using the following command.
Getting integrated (NTLM) authentication to work
Finally accessing MSSQL Server with R
I was working with two different databases. One was remote and with that it worked immediately. The other one was a local installation on my computer.
For the local one I got an error message. Note: I don’t think it had anything to do with the databases being remote/local, just with the settings I used for installing my database!
Error in rJava::.jcall([email protected], “Ljava/sql/Connection;”, “connect”, :
java.sql.SQLException: Network error IOException: Connection refused: connect
To resolve this, you need to open the SQL Server configuration manager. I have the SQL Server configuration manager and the SQL Server configuration manager (2016) installed. For some settings it doesn’t matter which one you use but for this one I had to use the older one otherwise my database (SQL Server 2012) wouldn’t show up.
Make sure to enable TCP/IP. Restart you SQL Server instance. Now it should be working!
All you need to connect (with Windows authentication) now is the following code:
conn <- RSQLServer::src_sqlserver("servername", database = "dbname")
Currently dplyr cannot deal with schema names in code like this:
conn %>% tbl("schema.table")
In this case you have to use
conn %>% tbl(sql("SELECT * FROM schema.table"))
But this issue is getting addressed in rstats-db/DBI/issues/24 (dplyr uses DBI).
Now that you have a connection to your SQL Server it's time to query all the data.
- stackoverflow.com: I/O Error: SSO Failed: Native SSPI library not loaded
- stackoverflow.com: JDBC connection failed, error: TCP/IP connection to host failed
The post Accessing MSSQL Server with R (RSQLServer with dplyr) appeared first on verenahaunschmid.